Query= MSMg01no498_m17.b1 MSMg01no498_m17.b1 CHROMAT_FILE:
MSMg01no498_m17.b1 PHD_FILE: MSMg01no498_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:58 2005
(604 letters)
>mm_chr6_92857312_92858315
Length = 1004
Score = 563 bits (291), Expect = e-164
Identities = 344/377 (91%), Gaps = 27/377 (7%)
Strand = Plus / Plus
Query: 229 ttcaggtacatttacactgattccccacccccctttctctctctctctctctctctctct 288
|||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 454 ttcaggtatatttacactgatttc-----------tctctctctctctctctctctctct 502
Query: 289 ctctctctctctctctcttccacacacacacacacacacacacacacacacacacacaca 348
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 ctctctctctctctctct--------------cacacacacacacacacacacacacaca 548
Query: 349 cacacacacacacagggaaagttatctcataatggcctc-gctctgatcataatctggaa 407
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct: 549 cacacacacacacagggaaaattatctcataatggcc-ctgctctgatcataatctggaa 607
Query: 408 atgaacctttctgcttctttgtccattttcttctctaaaggagcggtattgctgttccag 467
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 608 atgaacctttctgcttctttgtccattttcttctctaaaggagcggtgttgctgttccag 667
Query: 468 ataatacttgtcttgttatagccatgtataaccagcattgggaatggtctggatttgtca 527
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ataatacctgtcttgttatagccatgtataaccagcattgggaatggtctggatttgtca 727
Query: 528 aaaacgctgaggcaaccttatagacatatatgttgagccaagaaagttctccaagctaat 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaaacgctgaggcaaacttatagacatatatgttgagccaagaaagttctccaagctaat 787
Query: 588 tcatcctttactgtatt 604
|||||||||||||||||
Sbjct: 788 tcatcctttactgtatt 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_m17.g1 MSMg01no498_m17.g1 CHROMAT_FILE:
MSMg01no498_m17.g1 PHD_FILE: MSMg01no498_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:59 2005
(539 letters)
>mm_chr6_93018560_93019498
Length = 939
Score = 429 bits (222), Expect = e-124
Identities = 263/284 (92%), Gaps = 14/284 (4%)
Strand = Plus / Minus
Query: 1 cacgttaagtgagagaccctctctcaaaaaaga-----gggtttctctcttgaggaggac 55
||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 565 cacgttaagtgagagaccctctctcaaaaaataaaaacgg--------attgaggaggac 514
Query: 56 agccattgttgacctaagtccacacaa-tgtgtacaagctggcatgcttacacacccaga 114
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 513 agccattgttgacctaagtccacacaattgtgcataagctggcatgcttacacacccaga 454
Query: 115 gaaacaaaacaaatgctgacgaaaagtggcagaaggagatcagagaagatcaggaggaga 174
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 453 gaaacaaaacaaatgctgatgaaaagtggcagaaggagatcagagaggatcaggaggaga 394
Query: 175 agagaaaaggcaaagagtctgagctggaactgatctgcaaagatgacttacagagagcgt 234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agagaaagggcaaagagtctgagctggaactgatctgcaaagatgacttacagagagcgt 334
Query: 235 ggctatccatctcactacattttcaaggttatgaggttaaatgg 278
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggctatccatctcactacattttcaaggttatgaggttaaatgg 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
