BAC Information

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BAC

Clone NameMSMg01-498N16
Chromosome6 (Build37)
Map Location 44,267,537 - 44,428,584
singlet/doubletdoublet
Overlap genenone
Upstream geneTpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498N16.T7 (MSMg01no498_n16.b1)MSMg01-498N16.TJ (MSMg01no498_n16.g1)
ACCAG575077AG575078
length767774
length of high quality
(start - end)		617 (73 - 689)606 (77 - 682)
definitionCHROMAT_FILE: MSMg01no498_n16.b1 PHD_FILE: MSMg01no498_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:04 2005CHROMAT_FILE: MSMg01no498_n16.g1 PHD_FILE: MSMg01no498_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,267,537 - 44,268,152)(44,428,082 - 44,428,584)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACTCTTTTCAAAAGGATAAAGACAAAATAAATAACTTTAGTAT
CTCGATACTTCCTAGGTAGTGATTTTAAAGAAATATAATTTAGTCAAGAT
CTTAAATCCAACTTCTAAACAGGGATCATTGAGTTGGTAAAGGTTTTATA
CATTATATGATTTGCATTAATATCATACAATATTTTATATATTTTATACA
TTAATAATACAATGTTTTCTACATTCTACATAAAAACATTTATTAATTTT
ATGTGTATGCCTGAGTTTATGTTTTTGCCACGTGCACCTAGATGTTCACA
GAGAACAGAGGAGGGTGTTGGATTCCCTAGAATTGGGCTTACAGGTTGTT
GTGAGCTGACAGATGTAAGTTTTGGGAAGGCAACTCATGTGCACCGTCTT
TTCTTGTGTTTGCTTGAGGTCTTATAAAAGTATTTTAGGAAAAATGACAT
AGTATATATGTTTCTCTGAATTTGTCTTACATCAATCTACTCTAAATCAG
AAAAAGTCAACTATAGTAAAGGGCTGTGAGGTCATTTTAAAAAAGAAATG
TAGTGATTATTTATGAATGTGGTGCTAGGATTACATTACACAATACCTGT
GGTTAAGAATTCATCTACATCTGTGATAATTTAAAGAAATTCATTTGTAT
GTAGTCAGAGAAAATATGAAGAAATAGTACTGAATAGTGCATATTATTAT
GGATATATGGTATATGA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCTAAAAAATAAACAAGAGG
CTGAAACCAATTTTAAGCAACAAATATTCCATAAATGCTAGAAGTAATAT
GTGACTACAGATTTGTAACATCTTTGAGAGCTGCTCTGAGTCAGCTTGGG
ACAGTAAAGAAAAGTCTTACTTTGTAAAATTCTGCTGTAAGATTTTGGTA
GAAAAGTATCTTCTACTCCTTTTCCATATCCTGCTTTCTGTTTTGTTAAA
TAAATACATAGAAAAGCCCTTTCTCTCGACAAACCATAGGAATGAATCAG
ATACCAACAACAGATAGACAATAGACAAAGGACAGACAGATAGGAGACAC
AAGGTGAGAAATGTTGGATCGAAAATTTGGTTCACTCTAAACTAGTTCAT
GAGCACATCCGGTTTTTATTAATTAATGTGGCAATGGCACAGTAAGTTCT
CCTCTAAGGTTCCTTTAATGTCTTGGTACTGTACAACAGGTTACGTTGTT
TTGTACAAATTGGCTATTCAACGACCAGGCAGATGTCCAGTGGTTTCAGA
TCTTAGCAGAAAGATGTGTATCAAAAATAACTTATTTAGCCTTTTTCAGT
CCCAATGAAGTATGTGTTTATTTTTTCTCTTGTCAGATTATGAACTCCTA
CTGTTTTCCTTTACTGAGAAATTGTCAGTTGATGTATTTACTTTCTCACA
CTTTCTCCCCTTCTTTAGTCAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_n16.b1 MSMg01no498_n16.b1 CHROMAT_FILE:
MSMg01no498_n16.b1 PHD_FILE: MSMg01no498_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:04 2005
         (617 letters)



>mm_chr6_44267336_44268352
          Length = 1017

 Score = 1145 bits (592), Expect = 0.0
 Identities = 610/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   taaagacaaaataaataactttagtatctcgatacttcctaggtagtgattttaaagaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taaagacaaaataaataactttagtatctcgatacttcctaggtagtgattttaaagaaa 261

                                                                       
Query: 62  tataatttagtcaagatcttaaatccaacttctaaacagggatcattgagttggtaaagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tataatttagtcaagatcttaaatccaacttctaaacagggatcattgagttggtaaagg 321

                                                                       
Query: 122 ttttatacattatatgatttgcattaatatcatacaatattttatatattttatacatta 181
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 ttttatacattatatgatttgcattaatatcatacaatattttatacattttatacatta 381

                                                                       
Query: 182 ataatacaatgttttctacattctacataaaaacatttattaattttatgtgtatgcctg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataatacaatgttttctacattctacataaaaacatttattaattttatgtgtatgcctg 441

                                                                       
Query: 242 agtttatgtttttgccacgtgcacctagatgttcacagagaacagaggagggtgttggat 301
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 442 agtttatgtttttgccacgtgcacctagatgttcacagagatcagaggagggtgttggat 501

                                                                       
Query: 302 tccctagaattgggcttacaggttgttgtgagctgacagatgtaagttttgggaaggcaa 361
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 502 tccctagaattgggcttacaggttgttgtgagctgactgatgtaagttttgggaaggcaa 561

                                                                       
Query: 362 ctcatgtgcaccgtcttttcttgtgtttgcttgaggtcttataaaagtattttaggaaaa 421
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 562 ctcatgtgcaccgtcttttcttgtgtttgcttgaggtcctataaaagtattttgggaaaa 621

                                                                       
Query: 422 atgacatagtatatatgtttctctgaatttgtcttacatcaatctactctaaatcagaaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgacatagtatatatgtttctctgaatttgtcttacatcaatctactctaaatcagaaa 681

                                                                       
Query: 482 aagtcaactatagtaaagggctgtgaggtcattttaaaaaagaaatgtagtgattattta 541
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagtaaactatagtaaagggctgtgaggtcattttaaaaaagaaatgtagtgattattta 741

                                                                       
Query: 542 tgaatgtggtgctaggattacattacacaatacctgtggttaagaattcatctacatctg 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgaatgtggtgctaggattacattacacaatacctgtggttaagaattcatctacatctg 801

                           
Query: 602 tgataatttaaagaaa 617
           ||||||||||||||||
Sbjct: 802 tgataatttaaagaaa 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no498_n16.g1 MSMg01no498_n16.g1 CHROMAT_FILE:
MSMg01no498_n16.g1 PHD_FILE: MSMg01no498_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:04 2005
         (606 letters)



>mm_chr6_44427579_44428584
          Length = 1006

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Minus

                                                                        
Query: 104  gctgctctgagtcagcttgggacagtaaagaaaagtcttactttgtaaaattctgctgta 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gctgctctgagtcagcttgggacagtaaagaaaagtcttactttgtaaaattctgctgta 947

                                                                        
Query: 164  agattttggtagaaaagtatcttctactccttttccatatcctgctttctgttttgttaa 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  agattttggtagaaaagtatcttctactccttttccatatcctgctttctgttttgttaa 887

                                                                        
Query: 224  ataaatacatagaaaagccctttctctcgacaaaccataggaatgaatcagataccaaca 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  ataaatacatagaaaagccctttctctcgacaaaccataggaatgaatcagataccaaca 827

                                                                        
Query: 284  acagatagacaatagacaaaggacagacagataggagacacaaggtgagaaatgttggat 343
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 826  acagatagacaatagacaaaggacagacagataggagacacgaggtgagaaatgttggat 767

                                                                        
Query: 344  cgaaaatttggttcactctaaactagttcatgagcacatccggtttttattaattaatgt 403
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 766  cgaaaatttggttcactctaaactagttcatgagcacatcccgtttttattaattaatgt 707

                                                                        
Query: 404  ggcaatggcacagtaagttctcctctaaggttcctttaatgtcttggtactgtacaacag 463
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 706  ggcaatggcacagtaagttctcctctaagtttcctttaatgtcttggtactgtacaacag 647

                                                                        
Query: 464  gttacgttgttttgtacaaattggctattcaacgaccaggcagatgtccagtggtttcag 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  gttacgttgttttgtacaaattggctattcaacgaccaggcagatgtccagtggtttcag 587

                                                                        
Query: 524  atcttagcagaaagatgtgtatcaaaaataacttatttagcctttttcagtcccaatgaa 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  atcttagcagaaagatgtgtatcaaaaataacttatttagcctttttcagtcccaatgaa 527

                                   
Query: 584  gtatgtgtttattttttctcttg 606
            |||||||||||||||||||||||
Sbjct: 526  gtatgtgtttattttttctcttg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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