Query= MSMg01no499_e01.b1 MSMg01no499_e01.b1 CHROMAT_FILE:
MSMg01no499_e01.b1 PHD_FILE: MSMg01no499_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:35 2005
(562 letters)
>mm_chr6_40179836_40180797
Length = 962
Score = 1009 bits (522), Expect = 0.0
Identities = 548/558 (98%), Gaps = 3/558 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggagcagttatcgaatcccaacctcagtcactatgagttctgtatttcttggg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaattcaggagcagtcatcgaatcccaacctcagtcactatgagttctgtatttcttggg 833
Query: 65 gttatacaacacaaatgtgtatccatatgtatatgtataagcatatattcaatgaatata 124
||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 832 gttat---acacaaatgtgtatccatatgtatatgtataagtatatattcaacgaatata 776
Query: 125 ttaatatgtacatactatgttgatcattaatatgttaatatatacagcaaattaatttcc 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 775 ttaatatgtacatactatgttgatcatcaatatgttaatatatacagcaaattaatttcc 716
Query: 185 tattcatgaagcaattctacgtggaattttacattacttaatctgaaggtctcgagcact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tattcatgaagcaattctacgtggaattttacattacttaatctgaaggtctcgagcact 656
Query: 245 tggcaaatatttgattttggcattgagcctcaaactatttgactgcagaaagagctaaga 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgacaaatatttgattttggcattgagcctcaaactatttgactgcagaaagagctaaga 596
Query: 305 acgacccattccattttcttctgccacgctcatttgggaacacaagtgctacagatgaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acgacccattccattttcttctgccacgctcatttgggaacacaagtgctacagatgaag 536
Query: 365 caaccgctggcctggactgctttgcccacctgatcttggacatatcctacacggcgaagg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 535 caaccgctggcctggactgctttgcccacctgatcttggacatatcctacacagtgaagg 476
Query: 425 gagatctggtatgagcatccacacggagtgggaagaagagttctggaaaggaaacgagtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gagatctggtatgagcatccacacggagtgggaagaagagttctggaaaggaaacgagtg 416
Query: 485 aagagtgtagcaacacatatttttccatgtgaatctttgcagcgtcttatccatctgggc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagagtgtagcaacacatatttttccatgtgaatctttgcagcgtcttatccatctgggc 356
Query: 545 cttggtttagagctgaga 562
||||||||||||||||||
Sbjct: 355 cttggtttagagctgaga 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_e01.g1 MSMg01no499_e01.g1 CHROMAT_FILE:
MSMg01no499_e01.g1 PHD_FILE: MSMg01no499_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:36 2005
(599 letters)
>mm_chr6_40099604_40100602
Length = 999
Score = 1151 bits (595), Expect = 0.0
Identities = 598/599 (99%)
Strand = Plus / Plus
Query: 1 ttctacttcacagaagaaagctatctaaaaataataaaaataattttgaaatattttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctacttcacagaagaaagctatctaaaaataataaaaataattttgaaatattttatt 260
Query: 61 aacctcagtgaaattatcaactcaggtaagtattactgctctgaaaatcactgtctatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctcagtgaaattatcaactcaggtaagtattactgctctgaaaatcactgtctatgt 320
Query: 121 agctaccaaagaaaaggacattttcttaaatggtatcttttgtactgactatccatggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctaccaaagaaaaggacattttcttaaatggtatcttttgtactgactatccatggta 380
Query: 181 ctttgtttttgaatctctagaggaaagcctagctgggtatataagataagaaagagttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgtttttgaatctctagaggaaagcctagctgggtatataagataagaaagagttca 440
Query: 241 tcctcaccctaatcatgcatccaacaaggacatcaccagtgacattacagcctgatgttg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcaccctaatcaggcatccaacaaggacatcaccagtgacattacagcctgatgttg 500
Query: 301 tgtgtatttgatgttattgaataaaatatctcttgtggcattttcttgacagcattgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtatttgatgttattgaataaaatatctcttgtggcattttcttgacagcattgcct 560
Query: 361 attgttaatccactaggctttaagtagacctgccagattctaggaagtataggaagaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgttaatccactaggctttaagtagacctgccagattctaggaagtataggaagaagt 620
Query: 421 tcagtgccactaccaggaagtgatcacacagatctggaagccaagacttgttgaggctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagtgccactaccaggaagtgatcacacagatctggaagccaagacttgttgaggctca 680
Query: 481 aaaggcaaagcctgctagagtcaaaagatgtaaaggtcgtggccgtcacatgctagcatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggcaaagcctgctagagtcaaaagatgtaaaggtcgtggccgtcacatgctagcatg 740
Query: 541 ccaggctagacactgctttgaaatttactgggaaggatttgattatgctaaaagcctta 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaggctagacactgctttgaaatttactgggaaggatttgattatgctaaaagcctta 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
