XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATGGCGGAATTCAAGGCC
CATTACAAACATGATAAAAGCAATCTAGAGCAAACCAGTAGCCAACATCA
AAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTAAAATCAGGGACTAGA
CAAGGCTGCCCACTTTCTCCCTACCTATTCAAAATTGTACTTGAAGCTCT
TGCCAGAGCAATTCCACAACAAAAGGAAATCAAGAGGATACAAATTGGAA
AGAAAGAAGTCAAAATATCACTTTTTGCAAATGATATGCTAGTATATATA
AGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTT
CAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTC
TCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGCAAAAAACACCC
TTTACAATAGTCAAAAATAATATCAAAATACCTTGGTGTGACTCTAATTA
AGGAAGTTAAAGATCTGTATAATAAGAACTTCAAGATTCTGAAGAAAGAA
ATTAAAGAAGATCCCAGAAGATGGAAAGATCTCCCATGCTCATAGATGGG
CAGGATCAATATAGTAAAAATGGCTGTCTTTCCAAAAGCAATCTACATAT
TCATTGCAATCCCCATCAAAATTCCAACTCAATTCTCCAACGAATTAGAA
AGGGCAATCTGCAAATTCATCTGGGATAACA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGGTCAACAATAGACAAACAA
AAGACAAAAAAGATAATTTCTTTCAAATTATGAAAATTATGTTTTTTTTA
TACTCAACTAAACTGGCATCATAAGACATCTTGGAAATGTTATTTTGATG
AAACAGTTTAGCCATTATATTCATGCAGAAATTTTTTTTGGGGGGGGTGA
AGAAAGTTATCAGGAAATTGGATTTTAAAAGAGTCTTTTAGTCTTTATTC
TTTTGTCAACATGATGCTTTCTCTACCCTTTAGCTTAAATTCTGATCAAG
TGAAAACAGAATCAGTCATTGTTCTTTGGATAACTTCTCTTTCTCTTTCT
CTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCT
TTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTT
CTTTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTTCTCTTTCTCTCCACCC
TCTCTCTCTCACACACACACACATCATTAATATTCATAGGCCAATGAAAA
TGGAATGTTGGAAGCTGATAGGTGAATGCTGCATACATACTTGTACATGT
GTGTGAATAGACTCTATTTCTGCAGGTTTCATTTTTCCTATTGTCGCGTT
TATCCTCAT

Query= MSMg01no499_f20.g1 MSMg01no499_f20.g1 CHROMAT_FILE:
MSMg01no499_f20.g1 PHD_FILE: MSMg01no499_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:44 2005
         (662 letters)



>mm_chr6_9577907_9578965
          Length = 1059

 Score =  868 bits (449), Expect = 0.0
 Identities = 636/739 (86%), Gaps = 84/739 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaggtcaacaatagacaaacaaaagacaaaaaagataatttctttcaaattatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aaaaaggtcaacaatagacaaacaaaagacaaaaaagataatttctttcaaattatgaaa 187

                                                                       
Query: 61  attatgttttttttatactcaactaaactggcatcataagacatcttggaaatgttattt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 attatggtttttttatactcaactaaactggcatcataagacatcttggaaatgttattt 247

                                                                       
Query: 121 tgatgaaacagtttagccattatattcatgcagaaatttttttt-ggggg--gggtgaag 177
           |||||||||| ||||||||||| ||||||| ||||||||||||| |||||  ||||||||
Sbjct: 248 tgatgaaacaatttagccattagattcatgaagaaatttttttttgggggaggggtgaag 307

                                                                       
Query: 178 aaagttatcaggaaattggattttaaaagagtcttttagtctttattcttttgtcaacat 237
           ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 308 aaagttagcaggaaattggattttaaaag--tcttttagtctttattcttttgtcaacat 365

                                                                       
Query: 238 gatgctttctctaccctttagcttaaattctgatcaagtgaaaacagaatcagtcattgt 297
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gatgctttctctaccctctagcttaaattctgatcaagtgaaaacagaatcagtcattgt 425

                                                                       
Query: 298 tctttgg-ataac--ttctctttctctttctctttctctttctctttctctttctctttc 354
           ||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctttggcataacatttctctttctctttctctttctctttctctttctctttctctttc 485

                                                                       
Query: 355 tctttctctttctctttctctttctctttctctttctctttctctttctctttctctttc 414
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct: 486 tctttctctttctctttctctttctctttctctttctctctctctctctctctctctctc 545

                                                                       
Query: 415 tctttctctttctttctctttctct-t---tctctc--tctc--tctc--tctc--tctc 462
           ||| ||||| ||| ||||| ||||| |   ||||||  ||||  ||||  ||||  ||||
Sbjct: 546 tctctctctctctctctctctctctctcgctctctccctctccctctccctctccctctc 605

                                                                       
Query: 463 --tctc--tctc--tctc--tctc------------------------------------ 478
             ||||  ||||  ||||  ||||                                    
Sbjct: 606 cctctccctctccctctccctctccctctccctctccctctccctctccctctccctctc 665

                                                                       
Query: 479 --------tctcttcctcttcctctt-c-----ctcttcctctttctctttctctccacc 524
                   |||||| ||||| ||||| |     ||||| |||||||||||||||||| | 
Sbjct: 666 cctctccctctctttctctttctctttcactttctctttctctttctctttctctcc-ct 724

                                                                       
Query: 525 ctctctctctcacacacacacacatcattaatattcataggccaatgaaaatggaatgtt 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ctctctctctcacacacacacacatcattaatattcataggccaatgaaaatggaatgtt 784

                                                                       
Query: 585 ggaagctgataggtgaatgctgcatacatacttgtacatgtgtgtga-atagactctatt 643
           ||||||||||||||||||||| ||||||||||||||||||||||| | || |  ||||||
Sbjct: 785 ggaagctgataggtgaatgctacatacatacttgtacatgtgtgt-acat-g--tctatt 840

                              
Query: 644 tctgcaggtttcatttttc 662
           |||||||||||||||||||
Sbjct: 841 tctgcaggtttcatttttc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 152
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1059
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1049
Effective search space:   683948
Effective search space used:   683948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)