BAC Information

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BAC

Clone NameMSMg01-500D12
Chromosome6 (Build37)
Map Location 105,007,538 - 105,007,869
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500D12.T7 (MSMg01no500_d12.b1)MSMg01-500D12.TJ (MSMg01no500_d12.g1)
ACCAG576112AG576113
length635681
length of high quality
(start - end)
275 (287 - 561)332 (302 - 633)
definitionCHROMAT_FILE: MSMg01no500_d12.b1 PHD_FILE: MSMg01no500_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:49 2005CHROMAT_FILE: MSMg01no500_d12.g1 PHD_FILE: MSMg01no500_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTGCCGAGTCGGGNGGAANNCNNNGNTTGACTATAACTCGAGTNNNNAA
NGGGGNTGTTTGATTTTCTGAAGTCCACCTTCTTGACTTCTTTATATATG
TTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGA
AACTTTGGATTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCA
CAAGCCATTGCTGTTCTGTTCAGGAANNNCTCCCCTGTGCCCATATCTTC
AAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTA
TGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAG
TATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCA
CCATTTGTCCCTAATCCTGCCCCTTCCCTTTTTACCTTCCCCCTCCACTC
TTCGTCCCAGGTCCCTCCCTCCCTCTACCTCCTGTGATTTTTTTGTTCCC
CCTTCTATGTAAAATTAAAGCACCCACACTTTGAACTTCCTTCTTCTTAT
TCTCCATATGGNTTGTGGGTTGTATCCTGGGTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTAGAAAGATCTTGCAGTCATCAATTTTGGACCAGTTATAAAA
CCATGACCAATAGAGACATCTAAGGAGACTGCAGGTATATTCTATGATGC
AGTTTAAAATATATCATGACTTGGGTATCAGAGATGGATGGCAGTCACTA
AAGAGAGAGGAATTATTAACAGCCGATAGCACAAACAAAGTAGTTTCAGG
ACAAAATTCAGTCTTTTTTACCAACCTGTCTAGCAAGCATTCCAATGTTT
CCCTGAGCACTTTTTAAAATATAATGAAATCCATCCACTTGGTGATTAAA
AATCTATAACCTGAAGTTATAAAAAGTGTAAGCACAGGGATTATTGTTTT
CTTGGTTATCAAGGAAATAAGGCATGGTATTAAGTAATCCAAAGCAGCTG
ATAGTGCAGAGATGATATATGCTTATCTTTGGAAATGCATTAATTTCTCT
TAGAAATAGTTCTAGCATTTTAAAGTATTTATTTAAGCCAATATTAAAAT
TAGAGTGCATTCCCTAAGCAGGTATTCATTTCTGGAACAGAGAGTGAAAT
CAAATCTATGCTTGGAGGCAAAAGAAAAATCAGTCTGAGATTAAAACAGC
TCTGAATAATTCATAGGTGAGTAATTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_d12.g1 MSMg01no500_d12.g1 CHROMAT_FILE:
MSMg01no500_d12.g1 PHD_FILE: MSMg01no500_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:49 2005
         (332 letters)



>mm_chr6_105007338_105008069
          Length = 732

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagcactttttaaaatataatgaaatccatccacttggtgattaaaaatctataacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cctgagcactttttaaaatataatgaaatccatccacttggtgattaaaaatctataacc 473

                                                                       
Query: 61  tgaagttataaaaagtgtaagcacagggattattgttttcttggttatcaaggaaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgaagttataaaaagtgtaagcacagggattattgttttcttggttatcaaggaaataag 413

                                                                       
Query: 121 gcatggtattaagtaatccaaagcagctgatagtgcagagatgatatatgcttatctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcatggtattaagtaatccaaagcagctgatagtgcagagatgatatatgcttatctttg 353

                                                                       
Query: 181 gaaatgcattaatttctcttagaaatagttctagcattttaaagtatttatttaagccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaaatgcattaatttctcttagaaatagttctagcattttaaagtatttatttaagccaa 293

                                                                       
Query: 241 tattaaaattagagtgcattccctaagcaggtattcatttctggaacagagagtgaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tattaaaattagagtgcattccctaagcaggtattcatttctggaacagagagtgaaatc 233

                                           
Query: 301 aaatctatgcttggaggcaaaagaaaaatcag 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aaatctatgcttggaggcaaaagaaaaatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)