BAC Information

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BAC

Clone NameMSMg01-500K02
Chromosome6 (Build37)
Map Location 72,679,672 - 72,679,841
singlet/doubletsinglet
Overlap geneTcf3
Upstream geneReep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890
Downstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500K02.T7 (MSMg01no500_k02.b1)MSMg01-500K02.TJ (MSMg01no500_k02.g1)
ACCAG576425AG576426
length641719
length of high quality
(start - end)
171 (57 - 227)170 (76 - 245)
definitionCHROMAT_FILE: MSMg01no500_k02.b1 PHD_FILE: MSMg01no500_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:17 2005CHROMAT_FILE: MSMg01no500_k02.g1 PHD_FILE: MSMg01no500_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATAGGTCGNGACTATCGCNGGAATCAGAAGAAGATACTTTAA
AACTAATGGAAGCTGAGTTTTCAGCCTTGAGATTAAGATGACCTCTCTAG
GCTTAGTAATTTATTATAAGTGGTATTATCATTATTATTGATTTGGTTTC
TTTTGAGACAGAGTCTCTCTATGTAAACTAAACCTAGCTGTTCTGGTTCT
CTATATAGACCAGGTTAGACCAGGTTATTTTACAGAGATGCCTATCTCTG
GCTCCCAAGTGCTGTCTGTCTGTCTGTGTGTTTAATACTTGCTATCAATG
ATTGACCCTGTCCTAAAATTCAGGCCTTGAGGATGGAGCATAGTGATAAA
ATGTATGCCACGCAGCTCAGAAGACAGTTCTCCCCTTTCACTGTGTGGGT
CCTGGGGATTGAACTTGGGCATCTGGCTTGGTGTCAGGCCTTACACTGGT
GTATCTGTTAGAAACTCAAGACTTGATGTTTCCTGCCTGTTTTACTGAAG
AAACCTTTCTGCTGAGCAGCTTGGTATCCCCAGATTCATCCTTTTCAGCT
CTGCCCCATCAGATCACTGTAATGACATGCCGTTATTACATTTTGTTGTC
CGAAGCCCTATTTAGGTGGGTTTGGGAATGGGTTCCTTTTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGCAACCTAGGCTACCAAGTCAGCC
TTGGACTATAGGGAGAGAACTGCCTTGCAATTAATTCCTAAGGCTGCTGT
GGCTGCCATCCTCACAGTTTCCCACTGTTTCTTTGACATTTTGGCCTGTG
CGTTTCAAAAATGTCTTTGTCCTCAGCATGGCTCTATGATGCCTGTCCCA
TAGCAGAGATGCAGGCTGGAACAAGGGCCAGAGGTTTTTAAGGATGTTGG
CTAGCAAATGACATTTTTTTCAGCTAAGTGTGAGGCCTCTGAGGCACGCG
CACTAAGTCATCCGCTGAGTACAGCACCCCCTCTGCAGAGGTCTGGGGTC
CCTAATAAGGCGCCAGAACACCCCTGCAAACACCTACCTACCAAAGGGCT
ACACTCTGGGCACGTTCTACCTCGATCGTATCCTCTGTCTCTAGACCTCA
AATTCTTCTCTCCTTAACACACAAGGTGATCCCCTTCTCTTCCACGGGCT
TGCCACACCCCAAAAGAGCAGAGTTTAATCGTGTTATCTTGAAAAGCCAG
TATGTACACAGTACACATCAGCGCTCCCTATGGCCAAACCGAATCAACAG
GTGCTCATTTCATTTATTCAACTAGCACTTATTATGTGTCTTTGGCAAGC
TATTCTAAACAAAGGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_k02.g1 MSMg01no500_k02.g1 CHROMAT_FILE:
MSMg01no500_k02.g1 PHD_FILE: MSMg01no500_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
         (170 letters)



>mm_chr6_72679472_72680041
          Length = 570

 Score =  329 bits (170), Expect = 6e-95
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaacctaggctaccaagtcagccttggactatagggagagaactgccttgcaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaacctaggctaccaagtcagccttggactatagggagagaactgccttgcaattaat 260

                                                                       
Query: 61  tcctaaggctgctgtggctgccatcctcacagtttcccactgtttctttgacattttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctaaggctgctgtggctgccatcctcacagtttcccactgtttctttgacattttggc 320

                                                             
Query: 121 ctgtgcgtttcaaaaatgtctttgtcctcagcatggctctatgatgcctg 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgcgtttcaaaaatgtctttgtcctcagcatggctctatgatgcctg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)