BAC Information

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BAC

Clone NameMSMg01-500O21
Chromosome6 (Build37)
Map Location 99,937,271 - 99,937,421
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500O21.T7 (MSMg01no500_o21.b1)MSMg01-500O21.TJ (MSMg01no500_o21.g1)
ACCAG576649AG576650
length825641
length of high quality
(start - end)
154 (63 - 216)---
definitionCHROMAT_FILE: MSMg01no500_o21.b1 PHD_FILE: MSMg01no500_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:40 2005CHROMAT_FILE: MSMg01no500_o21.g1 PHD_FILE: MSMg01no500_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATAGGTACAGAATCCGCGGAATTCATCCATCAGTT
TCTAGGAGAGAATTCTCCATTCACTCAGAAAGCAGGAAGATGAGGTGAGC
TCCCTCCAACCTATTCAGAGAAGAGAAACTTCTAATCCCAGAGAAAAGTA
GCCTGAGCTGAGAAGGAATGAAAAGCCAGATCTAGGCGGGTTAGGGGGGG
AGCGGGGGGGGGGTTGTATTTNTTTTTCTTTTTTTTTTTTTTTTTTTNNN
CGTTTTTTTTTTTTTTTTTGTTTGTTTGTCCTGTAACAACACCGAACGCT
CTTCTCTTTTTTAAATACGCGATGTCCTTCATCTCGCGTCTCCAATCTTC
TGTTCTTTCACTCCTACTTAATTCGACACATTACTCATCTGCTTCTGTTC
TCTTTGATCTGTTTCTTTTGCGCCCCCCCTCTCCTTTTTTCCTTCCTTCC
CTTTTCCTTTTTCCCTCGCTTGTTCCCCGTTCTCCCCCTCTCTCCTTTTT
GATGGACTCCCTACCTCTACCCTTCCCTTTACGTACTCTGCCTTTTTTCT
TTTTCCCCCTCTTCCACCCTCCCTCCTATTTCACTTTCCTCCTTCTTTCG
TCCATATTACTCACCTCGTTATCGTTACTTCTTCTTCGCTTACATTTTTT
TCGTTTCTCTTCCCTCTCTTATCGTCTCCCCTTCTTTCTTTTCCTGCGTG
TTCAGTCTCTTTGTGTTCCTCCCATCTTGTAACTTTTTTATTCTTCTCCT
CGTCATGATGTTTTGAATTAATTTCTTCCTCTATTTCCCTCTCCTCTTGT
TTACCCCTCTTCCTTACTATTTTTN
TAAAAACGCCCCNCCCTGCTCAATACGGACTTAAAGTTCCGATGCCTGAT
GACGTAGCGTGGACGGGTGCGTGCTGACCTACCAGCCCGAAAAACANNAT
TTACCCGACCCCTCCACCCAATTTTTTTAAAAAAAAAAAGCTTTTCCCCA
AGATTTGAAGGGAAACCTCCCCCCCGGGACCCAAAAAAAATCCCCCCTGC
CCCTTTTTTTTTTTTTTAAAANNNNGAAAAAAAAAAAAAAAAAAACCCCC
TCAAAAAGGGGGGGGTAAAAATGGGGGGGGGGCCCCCCCCCCCCCCATAA
AAAAGAGAAAACCCCCCTTTTTAAAAAAATTTTTACCCCCCCTTTTTTTA
AAAAAAAACCCCCCCCCCCCCCTTTTTTTTTTCCCCCCCCCCGGGGGGGG
GCCTTTTCTTTAAAAAAAAAACAAATTTNTTTTTTTAAATAAAAACAATC
CCCCCCCCCTCAATATTTATATATTGTGCCCCCCCCCCCCCCCCCCAAAA
AAAACCCTTTTCTTTTTTCCTTTTTTCTNTCTNNNNNNNNNNNNCATTCA
CAAAAAAAACCAACCCCCCCCGCGCCGTGGGGTTCTTCTATTTTCTTCTT
AAAAAATAACCCCCCCCCCCTTTTTATAGAGGGGGGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_o21.b1 MSMg01no500_o21.b1 CHROMAT_FILE:
MSMg01no500_o21.b1 PHD_FILE: MSMg01no500_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:40 2005
         (154 letters)



>mm_chr6_99937071_99937624
          Length = 554

 Score =  292 bits (151), Expect = 6e-84
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctccattcactcagaaagcaggaagatgaggtgagctccctccaacctattcagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttctccattcactcagaaagcaggaagatgaggtgagctccctccaacctattcagagaa 292

                                                                       
Query: 61  gagaaacttctaatcccagagaaaagtagcctgagctgagaaggaatgaaaagccagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gagaaacttctaatcccagagaaaagtagcctgagctgagaaggaatgaaaagccagatc 232

                                          
Query: 121 taggcgggttagggggggagcgggggggggg 151
           |||||||||||||||||||||||||||||||
Sbjct: 231 taggcgggttagggggggagcgggggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)