Query= MSMg01no501_a04.b1 MSMg01no501_a04.b1 CHROMAT_FILE:
MSMg01no501_a04.b1 PHD_FILE: MSMg01no501_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:46 2005
(692 letters)
>mm_chr6_101115062_101116153
Length = 1092
Score = 1193 bits (617), Expect = 0.0
Identities = 656/669 (98%)
Strand = Plus / Minus
Query: 24 ggaattctctagattctgcagaagaaacagtgtcctcccagaagagtgacagccatcata 83
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ggaattctctagatactgtagaagaaacagtgtcctcccagaagagtgacagccatcata 833
Query: 84 aagggaacaaggagagtcttctagaagcttccaagtatctcagaaactagatttctgaag 143
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 acgggaacaaggagagtcttctagaagcttccaagtatctcagaaactagatttctgaag 773
Query: 144 tagcgtagacactgtggcttggggtatttagttaaagttagcttcacaccagtgggttct 203
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tagcgtagacattgtggcttggggtatttagttaaagttagcttcacaccagtgggttct 713
Query: 204 tttgtccctttgaggagctgatggaagaatagtctcaccctagaaacatcgtcctgtctg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tttgtccctttgaggagctgatggaagaatagtctcaccctagaaacatcgtcctgtctg 653
Query: 264 taagaactcagatttacagttcactgaaattccacaatgcctgcccaatttggaccactc 323
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 652 taagaactcagatttatagttcactgaaattctacaatgcctgcccaatttggaccactc 593
Query: 324 tcccatatgacatttttccatttctggttatcaccagaactgtaatttgcttttaatttc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcccatatgacatttttccatttctggttatcaccagaactgtaatttgcttttaatttc 533
Query: 384 tcttcagttcagttaatttcagctaaggtagtttctataccactgcctcaagtagaaagt 443
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcttcagtccagttaatttcagctaaggtagtttctataccactgcctcaagtagaaagt 473
Query: 444 cggcatcaactatcacagataaaagctgtgcaccaaatactagacagtgttattaaaccc 503
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 472 tggcatcaactatcacagataaaagctgtgcaccgaatacaagacagtgttattaaaccc 413
Query: 504 tgtgttcactgtggatgccttctaatgactgggcacccactgcagctctctttatctttt 563
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgtgttcactgtgtatgccttctaatgactgggcacccactgcagctctctttatctttt 353
Query: 564 ctaaagagattgggtaaatatcaacatcattaagccggccccaaaatgattctttctacc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctaaagagattgggtaaatatcaacatcattaagccggccccaaaatgattctttctacc 293
Query: 624 taaaagaagcaactttgtcaacatcaacaacctaagagcctcttcagtgtctaagaccct 683
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 292 taaaagacgcaactttgtcaacatcaacaacctaagagcctcttcagtgtctaagagcct 233
Query: 684 cattattca 692
|||||||||
Sbjct: 232 cattattca 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_a04.g1 MSMg01no501_a04.g1 CHROMAT_FILE:
MSMg01no501_a04.g1 PHD_FILE: MSMg01no501_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:46 2005
(649 letters)
>mm_chr6_100956293_100957341
Length = 1049
Score = 1035 bits (535), Expect = 0.0
Identities = 605/655 (92%), Gaps = 44/655 (6%)
Strand = Plus / Plus
Query: 1 tacagatctagccaaagttactaactgtgccaaaagaggcaaaaaaaaaaaaaaaaaaaa 60
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 203 tacagatctagccaaagttactaattgtaccaaaagaggcaaaaaaaaaaaaaaaaaaaa 262
Query: 61 ------gcaacatcagaatccaggattggtactgtgtattgtctgtcatgttgtcatgtt 114
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaaagcaacatcagaatccaggattggtactgtgtattgtctgtcatgtt-------- 314
Query: 115 tgggttgcagaactgttggtaagacacacagagaaaggggaaagtgtttgggagaagcca 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgggttgcagaactgttggtaagacacacagagaaaggggaaagtgtttgggagaagcca 374
Query: 175 ccgttaatagacatgatctctggatgtccccagatgctggagtttgtcctggatgtcccc 234
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccattaatagacatgatctctggatgtccccagatgctg--------------------- 413
Query: 235 agatgctgaagtttgcagacaaagatctcaaagccattattataagctactttacaagaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 --------aagtttgcagacaaagatctcaaagccattattataagctactttacaagaa 465
Query: 295 aaggatttgtactttagcttggtatcagtctctggagtagcacagggcatcagaaataag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaggatttgtactttagcttggtatcagtctctggagtagcacagggcatcagaaataag 525
Query: 355 agtacacacatatgtatgtctatatctgctagccactatctttttatgaagccatcagta 414
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acttcacacatatgtatgtctatatctgctagccactatctttttatgaagccatcagta 585
Query: 415 ctgggtattaggattaatccaagtatattacatattatgtgcaaaagtggtataaagaaa 474
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 586 ctgggtattaggattaatccaagtatattacatat-atgtgcaaaagtggtataaagaaa 644
Query: 475 attgttagtttatccaattaaatacacttataaaagtggtttagaaccaaaagccaagag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 attgttagtttatccaattaaatacacttataaaagtggtttagaaccaaaagccaagag 704
Query: 535 tattcaataacagcaggtcccccttatgaccttttctaaaccaggtactttccaaaggtt 594
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 705 tattcaataacagcaggtcccccttataaccttttctaaaccaggtactttccaaaggtt 764
Query: 595 catctccaaacaccatggttggattcagtttctaccctctgagcacccggcaaag 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 catctccaaacaccatggttggattcagtttctaccctctgagcacccggcaaag 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
