BAC Information

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BAC

Clone NameMSMg01-501B19
Chromosome6 (Build37)
Map Location 123,184,237 - 123,184,769
singlet/doubletsinglet
Overlap geneClec4n
Upstream geneMug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1
Downstream geneClec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501B19.T7 (MSMg01no501_b19.b1)MSMg01-501B19.TJ (MSMg01no501_b19.g1)
ACCAG576789AG576790
length749724
length of high quality
(start - end)		639 (67 - 705)533 (60 - 592)
definitionCHROMAT_FILE: MSMg01no501_b19.b1 PHD_FILE: MSMg01no501_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:53 2005CHROMAT_FILE: MSMg01no501_b19.g1 PHD_FILE: MSMg01no501_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGCTGTATGCAACTTGAAGGGCTCAGAAACACCTTAAGAAATGTT
CAACATCCTTAGTCATCAGGGAAATGCAAATCAAAAAAAAAAAAAAAAAA
AACCCTGAGATTCTACCTCACACCAGTCAGAATGGCTAAGATCAAAAACT
CAGGTGACAGCAAGGGTGTAGAGAAAGAGAAACACACCTCCATTGCTGAT
GGGATTTCAAGCTGGTACATTAACTGTGGAAATCAGTCTGGTGGTTCCTC
AGAAAATTGGACATAATACTACCTAAAGACCCAGCAATACTACTCCTAGG
CATCTACTCATAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTA
TGATCATTGCAGCCCTATTTATAATAGTCAGATGCTGGAAAAAATCCAGA
TGTCCCTCATCAGAGGAATAGATACAGAAAATGTGATACATTTACACAAT
GGAGTACTAGTTATCAATTAAAAACAATGACTTCATGAAATTCTCAGGCA
AATGGATGGAACTTGAGAATATCATGCTGAGTGAGGAGACTCAGTCACAA
AGGAACAAACATGGTATGTACTCACTGATAAATGGATATTAGCCCAAAAG
TTCTGAATACCCAAGATTCAATTCACAGACCATATGAAACCTAAGAAGGA
AGGCCAAAATGTGGAAGCTTCAATGCATTCTGGAAGGGTGAGCAAAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGGATGTTTTGTGCCTTGAGTTTTTTTTTTATTTAATATT
TTCTTTGACTGAGATATCCCTTTCTTCTATCCTGTCTTCAGTGCCTGAGT
TTTTCTCTTTCATTTCTTATACTGAGTTGTTGGTGAGGCATACCTCTTAG
ACCTTGTTTGTCTTCCCAAATTATACATTTCCAGTTTCATGTCTAGTTTT
ACTTATCGATTATATTTTTACTTTCATGACATAACTTCTTTTCATTATTT
TATTCTACCATGTGTGTTTTTACAGACTTCTAATTCAATGGTATTTTTGC
CAATTATTTTGGTCTCATATTGCTTTATTGGGGCATTGAAAAACAATACT
GGTCTTTGTTTGTAAATTATGGTTCCTTTTTTTTAAATGATCTTTGTTTC
TCTCTGTGTCAGTTGAGTCTCTGTGTGTTTCTTGTTCTTTTCTTTAATTT
TAAATTGTGTCCTTTAAAAAATTTGCCCGTTTATTTTCAAGAGAGAGAGA
GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGACAGACAGAGACAGAGACA
GAGACAGAGACAGAGACAGAGAGACAGAGACAGAGAGAGAGAGAGGAAGA
GAGGGAGAGAAGGTATGGAATTGGATGTGAGAAAAAGGTTGGGAAGGNAT
CTTGTGAAAAAATGGTTGGANAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_b19.g1 MSMg01no501_b19.g1 CHROMAT_FILE:
MSMg01no501_b19.g1 PHD_FILE: MSMg01no501_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
         (533 letters)



>mm_chr6_123184037_123184969
          Length = 933

 Score = 1000 bits (517), Expect = 0.0
 Identities = 529/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggatgttttgtgccttgagttttttttttatttaatattttctttgactgagatatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggatgttttgtgccttgagttttttttttatttaatattttctttgactgagatatcc 260

                                                                       
Query: 61  ctttcttctatcctgtcttcagtgcctgagtttttctctttcatttcttatactgagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcttctatcctgtcttcagtgcctgagtttttctctttcatttcttatactgagttg 320

                                                                       
Query: 121 ttggtgaggcatacctcttagaccttgtttgtcttcccaaattatacatttccagtttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtgaggcatacctcttagaccttgtttgtcttcccaaattatacatttccagtttca 380

                                                                       
Query: 181 tgtctagttttacttatcgattatatttttactttcatgacataacttcttttcattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctagttttacttatcgattatatttttactttcatgacataacttcttttcattatt 440

                                                                       
Query: 241 ttattctaccatgtgtgtttttacagacttctaattcaatggtatttttgccaattattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattctaccatgtgtgtttttacagacttctaattcaatggtatttttgccaattattt 500

                                                                       
Query: 301 tggtctcatattgctttattggggcattgaaaaacaatactggtctttgtttgtaaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtctcatattgctttattggggcattgaaaaacaatactggtctttgtttgtaaatta 560

                                                                       
Query: 361 tggttccttttttttaaatgatctttgtttctctctgtgtcagttgagtctctgtgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggttccttttttttaaatgatctttgtttctctctgtgtcagttgagtctctgtgtgtt 620

                                                                       
Query: 421 tcttgttcttttctttaattttaaattgtgtcctttaaaaaatttgcccgtttattttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgttcttttctttaattttaaattgtgtcctttaaaaaatttgcccgtttattttca 680

                                                                
Query: 481 agagagagagagagagagagagagggagagagagagagagagacagacagaga 533
           |||||||||||||||||||||||| ||||||||||||||| || ||| |||||
Sbjct: 681 agagagagagagagagagagagagagagagagagagagagggagagagagaga 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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