BAC Information

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BAC

Clone NameMSMg01-501G21
Chromosome6 (Build37)
Map Location 38,658,476 - 38,658,972
singlet/doubletsinglet
Overlap geneHipk2
Upstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501G21.T7 (MSMg01no501_g21.b1)MSMg01-501G21.TJ (MSMg01no501_g21.g1)
ACCAG577027AG577028
length740755
length of high quality
(start - end)		501 (44 - 544)326 (76 - 401)
definitionCHROMAT_FILE: MSMg01no501_g21.b1 PHD_FILE: MSMg01no501_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:16 2005CHROMAT_FILE: MSMg01no501_g21.g1 PHD_FILE: MSMg01no501_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTC
AGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGAAGAAGCTCCAGTTT
AATGTAGATAAAACTTCCTAACTGCGGGAACTTTCTGAAGGCATACTACA
CTACCTCATGAACTAGCACACTGCCAATGAAGGAAGGCTTTCTGCAGAGT
CCCGTGGGAGCAGGAAGCGTGGCTGTAACTGGGTGCTACGTGTCGCTGTC
TTGTTATCTGGAATGAGGTGGGGGCAGAGAAGCTCCCCAAACTCCTCCTG
AGGTTCATACTTTTCTCTGTGGCTGGGAAGTCCCGTGACTAACAAGCAAA
ATCACACGGCAGCTTAACATTGTATCTTTTTATACAGTTTTGTATCTGAT
AGGTTTGGGAAAGGTGAATTAGTGTGATAGCTTTGTTTCTATTCTTGTCT
ATTGCTAGAAATATCTGCGTACTAGGTAAACATACTACCCAGATTAGAGA
ACACGTGGGGAGCTGCTAAACAGCTCCCTTTAAAAACCAACCACACCTCT
GAGATTGGCACTGCTGGTTCCTCAGGCTCCTACATGTCAGTACCACAGGG
ACTCATTCCACCATTGTCTGTGATTATTATTGACAGTTTATCAATCCCAT
TCTGAACTGGTTAATGGANAAANAGAGAGAGAGAGANAGA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACATGTATCTCCACGAGACAGAAA
GGGCAGGGGTACACAAAGATTGCTAGAAACTCGTGTGTCCAGATGGGCAG
CCTGTGAGGATACAGGGAACAGAAAGTGGCCTCAGCAAGAACCAACCTGC
TGACACCTTGATCTCAGACTTTCAGACTTCAAAATAAAGAGAAAAGTCTG
GTGTAGATGTACATGCAGACAAACACCTTATACATAAAATAAATAGATAA
ACCTTAAAAAGAAACCCACAATGTAATTATGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGGAAGAAGAAGATGAGGAAAAAGAGGAGGAGAAG
GAGAAGGGGATGGTTGGTTCTGTTGTTTAAGCTTCTGGTATTCTGTATAT
CTATGGGCTAACTATAAACCTAACTATAATTTAGAGACCACATGGCCAGA
GCAGCCACTGCAGAGAACTGGAGTCTCTCCATCTAACACAGTATTCTATC
CTGTCTCACGCACACAGTCATACACATATGCACACTTGCATGCACCTGTG
CACATANAAGCAAGGTTCATAGGTCATGACAATCATCATAACAAGGTCTA
ACCAAGAGCTTCGGTGTATACCTTCAGGCACTTGGGACAGCCTTCTGAAG
GCTCTGCTTCTAACCCGGCAGAATTGGTTGCGCTCCCTCCCTGATCTCAA
GAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_g21.b1 MSMg01no501_g21.b1 CHROMAT_FILE:
MSMg01no501_g21.b1 PHD_FILE: MSMg01no501_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:16 2005
         (501 letters)



>mm_chr6_38658272_38659172
          Length = 901

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgtggttgctgggatttgaactcaggacctttggaagagcagtcagtgctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatgtggttgctgggatttgaactcaggacctttggaagagcagtcagtgctc 264

                                                                       
Query: 65  ttaaccactgagccatctctccagcccgaagaagctccagtttaatgtagataaaacttc 124
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 265 ttaaccactgagccatctctccagcccgaagaagctcccgtttaatgcagataaaacttc 324

                                                                       
Query: 125 ctaactgcgggaactttctgaaggcatactacactacctcatgaactagcacactgccaa 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ctaactgcgggaactttctgaaggcacactacactacctcatgaactagcacactgccaa 384

                                                                       
Query: 185 tgaaggaaggctttctgcagagtcccgtgggagcaggaagcgtggctgtaactgggtgct 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 tgaaggaaggctttctgcagagtcccgtgggagcgggaagcgtggctgtaactgggtgct 444

                                                                       
Query: 245 acgtgtcgctgtcttgttatctggaatgaggtgggggcagagaagctccccaaactcctc 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctgtcgctgtcttgttatctggaatgaggtgggggcagagaagctccccaaactcctc 504

                                                                       
Query: 305 ctgaggttcatacttttctctgtggctgggaagtcccgtgactaacaagcaaaatcacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgaggttcatacttttctctgtggctgggaagtcccgtgactaacaagcaaaatcacac 564

                                                                       
Query: 365 ggcagcttaacattgtatctttttatacagttttgtatctgataggtttgggaaaggtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcagcttaacattgtatctttttatacagttttgtatctgataggtttgggaaaggtga 624

                                                                       
Query: 425 attagtgtgatagctttgtttctattcttgtctattgctagaaatatctgcgtactaggt 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attagtgtgatagctctgtttctattcttgtctattgctagaaatatctgcgtactaggt 684

                            
Query: 485 aaacatactacccagat 501
           |||||||||||||||||
Sbjct: 685 aaacatactacccagat 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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