Query= MSMg01no501_h15.b1 MSMg01no501_h15.b1 CHROMAT_FILE:
MSMg01no501_h15.b1 PHD_FILE: MSMg01no501_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:19 2005
(259 letters)
>mm_chr6_126803578_126804235
Length = 658
Score = 464 bits (240), Expect = e-135
Identities = 249/252 (98%), Gaps = 1/252 (0%)
Strand = Plus / Plus
Query: 1 aacaagacttgttgggtttctacagggcttcagacacagagagaagagacagagtggtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaagacttgttgggtttctacagggcttcagacacagagagaagagacagagtggtag 260
Query: 61 gaggggatagaggcaactagtaattcgtccatattaaaatgaatactaaaatttggttga 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggggatagagacaactagtaattcgtccatattaaaatgaatactaaaatttggttga 320
Query: 121 ataaacttcaaaaatgtatgaaggatatgcaggaaccccctctgagcctggtttacactg 180
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ataaacttcaaaa-tgtatgaaggatatgtaggaaccccctctgagcctggtttacactg 379
Query: 181 cctaaaatttagctttttcatgagttaaggcatcttgagaaattaggaaatggggtgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctaaaatttagctttttcatgagttaaggcatcttgagaaattaggaaatggggtgggg 439
Query: 241 gtggggagattt 252
||||||||||||
Sbjct: 440 gtggggagattt 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 658
Length adjustment: 9
Effective length of query: 250
Effective length of database: 649
Effective search space: 162250
Effective search space used: 162250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no501_h15.g1 MSMg01no501_h15.g1 CHROMAT_FILE:
MSMg01no501_h15.g1 PHD_FILE: MSMg01no501_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:19 2005
(581 letters)
>mm_chr6_126967659_126968642
Length = 984
Score = 785 bits (406), Expect = 0.0
Identities = 509/554 (91%), Gaps = 20/554 (3%)
Strand = Plus / Minus
Query: 40 ttaactttaggcagaactgactagattccttgttctccataggccatacagcctggtagc 99
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ttaactttaggcagagctgactagattccttgttctccataggccatacagcctggtagc 925
Query: 100 acccacacctacctgagcataacaaacaaaccaaacaaacaaacaaaacatacacataca 159
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||
Sbjct: 924 acccacacctacctgagcataacaaacaaaccaaccaaccaaacaaaacacacacacaca 865
Query: 160 cacacacacacacaaaaaaaaaaaaaaaaaaaaa--aaaaaaacaaccaccaaaccctca 217
|||||||||||||| | | | | | | | | | | ||| |||||||||||||
Sbjct: 864 cacacacacacacacacacacacacacacacacacgaaa--------caccaaaccctca 813
Query: 218 aaacctaaaaaccccagacca-------aaaaaacaaaacttatcaaaaaaccaaaaacc 270
|||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct: 812 gaacctaaaaaccccagaccaaaaaaacaaaaaacaaaacaaaacaaaaaaccaaaaacc 753
Query: 271 ctgaactctgagccggaccgattgactgtcttcatcccagccctctgagcctctgaagca 330
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctgaactctgagtcggaccgattgactgtcttcatcccagccctctgagcctctgaagca 693
Query: 331 ggtcctaaaattccatgcatctagcaaattacaaagtgatgggtgcacaggagcgcccac 390
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 692 ggtcctaaaattccatgcatctagcagattacaaagtgatgggtgcacaggagcgcccac 633
Query: 391 agaacggtactggagaagcaatggttttagctcacaccataagccaactttgagacactt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agaacggtactggagaagcaatggttttagctcacaccataagccaactttgagacactt 573
Query: 451 gctcaaaaggttgggaagcagacacc---tgactagctcactttagtcttttccagatat 507
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 572 gctcaaaaagttgggaagtagacaccctctgactagctcactttagtcttttccagatat 513
Query: 508 cctttgctgggagatttccctggggacctagcacttgtccccggtcagctcttccctttc 567
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cctttgctgagagatttccctggggacctagcacttgtccccggtcagctcttccctttc 453
Query: 568 tatcccccatcttg 581
||||||| ||||||
Sbjct: 452 tatcccctatcttg 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 984
Length adjustment: 10
Effective length of query: 571
Effective length of database: 974
Effective search space: 556154
Effective search space used: 556154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
