BAC Information

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BAC

Clone NameMSMg01-501K04
Chromosome6 (Build37)
Map Location 78,975,412 - 78,975,762
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501K04.T7 (MSMg01no501_k04.b1)MSMg01-501K04.TJ (MSMg01no501_k04.g1)
ACCAG577184AG577185
length737758
length of high quality
(start - end)
542 (65 - 606)561 (79 - 639)
definitionCHROMAT_FILE: MSMg01no501_k04.b1 PHD_FILE: MSMg01no501_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:30 2005CHROMAT_FILE: MSMg01no501_k04.g1 PHD_FILE: MSMg01no501_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCATAAATCCGCGGAATTCCCTATC
CACTTACTCTGACAGCTGTATATTTGCATTCGTTCTCCTGTCCCTCTGGG
CCTGTTTCCTGTGCGCACCTCATATCTGATCCTGTCCCCTTTATTCCCCC
TTCCCTTTTTATACCAAGATCTCACTCCCCCCTCTGTCTTCCATTATGAT
TTTCTTCCCCCTTCTAAATGGGATTTAAGCATCCTTCCTTGATCCTTCCT
TCTTGTTTATCTTCTTAGGGTCTGTAGGATGTAGCATGGGAATTCTGTAT
TTTTTTTGCTAATATTTTTTTATCAGTGAATGCATGCCATGTATGTCCTT
TTGGGTTTGTGATACCCCACTCAGGATGATATTATACATAGGCTTATTCA
AGGCCCGTGGCACTTTTGTAGCAGAGGGCTACCATGTCTGACCTCAGTGG
GCGAGAATGTGTCTAATCCTGTAGAGACATGATGCCTCAGGGTGGGAGAA
TACAAGTCACTCAGAGAAGAGAGGAACGAGTATAGGGAGAAGAACTCTGT
GAGAGGGGCAGATAGTGGGGCCAACATTTGGGATCTAAATAAATAAAATT
ATTCATAAAAAATATTGTTTTTCCAAGGACTTGGATGAGTTTGGGGGCCG
ATAAGATCTAAAACATCAGACACAGATTGAAAAAAAAGACAGTGTTATCC
AGAACAACACCATAGTTTTTTCAAATTAAAGCTGAAG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCTCATACAGAAAAAAAAAA
ATTCTTCACCAGAAACATGTCTCCAGAAAATCAAGTGAGTGAAGTCCCTA
AGCTACAAGAGAAGGGATGAAGGAATGAAGCCAGAAGGGGCAGTCTGAGA
CAGTAGCAATACATACAATTGTCTTAAAATTAAGACATTGCTTGCTTAAA
ATACCCTGTATGCAAGTTGGTAGGACATTTTCTTGATTACTGCTTGATGG
AGAAGAGCTGCACAAAGTAAGGGTGATGTCTTGGGTGTCTGTGTCTTCTT
TAAAGCTATAAGAGCAGATTTAGGAAGCCCTGAGAAAAAATCCAGTAAGC
AGTGCTTCTCCATAGCCTCTGCTTTTGTTCTTACATTCAGGTTCCTGCTT
TGAGTTCCTTTTTTTTTAATTAATTTTTTTATTTTTTAAAATATTTTTTA
TTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCA
TACCCCCCCCCAACTTCCCTACCCACCCATTCCCATTTTTTTTCTTTTTT
TTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCATGTCCA
ATGGGCCACTCTTTCCAGTGATGGCCGTCTAAGCCATCTTTTGATACATA
TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT
CCACCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_k04.g1 MSMg01no501_k04.g1 CHROMAT_FILE:
MSMg01no501_k04.g1 PHD_FILE: MSMg01no501_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
         (561 letters)



>mm_chr6_78975412_78976374
          Length = 963

 Score =  590 bits (305), Expect = e-172
 Identities = 339/351 (96%), Gaps = 2/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgctcatacagaaaaaa--aaaaattcttcaccagaaacatgtctccagaaaatcaagt 58
           ||||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 351 gtgctcatacagaaaaaaacaaaaattcttcaccagcaacatgtctccagaaaaccaagt 292

                                                                       
Query: 59  gagtgaagtccctaagctacaagagaagggatgaaggaatgaagccagaaggggcagtct 118
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gagtgaagtccctaagctaaaagagaagggatgaaggaatgaagccagaaggggcagtct 232

                                                                       
Query: 119 gagacagtagcaatacatacaattgtcttaaaattaagacattgcttgcttaaaataccc 178
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 231 gagacagtagcaatacatacaattgtcttaaaattaagacaatgcttgcttaaaataccc 172

                                                                       
Query: 179 tgtatgcaagttggtaggacattttcttgattactgcttgatggagaagagctgcacaaa 238
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 171 tgtatgcaagttggtaggacattttcttgattactgcttgatgtagaagagctgcacaaa 112

                                                                       
Query: 239 gtaagggtgatgtcttgggtgtctgtgtcttctttaaagctataagagcagatttaggaa 298
           || ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 111 gtgagggtgatgccatgggtgtctgtgtcttctttaaagctataagagcagatttagaaa 52

                                                              
Query: 299 gccctgagaaaaaatccagtaagcagtgcttctccatagcctctgcttttg 349
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 51  gccctgagaaaaaatccagtaagcagtgcttctccatagcttctgcttttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 963
Length adjustment: 10
Effective length of query: 551
Effective length of database: 953
Effective search space:   525103
Effective search space used:   525103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)