Query= MSMg01no501_k12.b1 MSMg01no501_k12.b1 CHROMAT_FILE:
MSMg01no501_k12.b1 PHD_FILE: MSMg01no501_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:31 2005
(540 letters)
>mm_chr6_96300971_96301910
Length = 940
Score = 855 bits (442), Expect = 0.0
Identities = 478/500 (95%), Gaps = 19/500 (3%)
Strand = Plus / Minus
Query: 43 catacggacaaccaatagacatttagtttcaggcacaagggatactttctttaagatgtg 102
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 catagggacaaccaatagacatttagtttcaggcacaagggatactttctttaagatgtg 879
Query: 103 aattccctatgaagaacaccaccttagtgttagtgtggagactgtcagcaaaacagttga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 aattccctatgaagaacaccaccttagtgttagtgtggagactgtcagcaaaacagttga 819
Query: 163 agcagtagtggagcttttagttgtatcctgaacatcaattctgtgcaaaaaaaaaaaaaa 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 agcagtagtggagcttttagttgtatcctgaacatcaattctgtgcaaaaaaaaaaa--- 762
Query: 223 aaaaaagaaaagaaaaaaattaag--tanaattgggaaattatagtgcctcttaggggga 280
|||||||||||| || || || ||||||||||| |||||||||||||
Sbjct: 761 ------------aaaaaaattaagcata-aa-tgagaaattatagttcctcttaggggga 716
Query: 281 aagttctagaatgtgtataattccagggttgtttatgaaatactcaactctcatgagaaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aagttctagaatgtgtataattccagggttgtttatgaaatactcaactctcatgagaaa 656
Query: 341 aatccatttctctttcctttatctcagtttttttctctgcttccctctgtaggacttttc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatccatttctctttcctttatctcagtttttttctctgcttccctctgtaggacttttc 596
Query: 401 catgcgcacgatggttctcaagaggcacaggttggtaacttgtcagccttaagtatcgct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 catgcgcacgatggttctcaagaggcacaggttggtaacttgtcagccttaagtatcgct 536
Query: 461 aacacggttttcctttaccaaactactgaagaccctgaactgagtcccactggcctactg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aacacggttttcctttaccaaactactgaagaccctgaactgagtcccactggcctactg 476
Query: 521 tgagtcacagaaagctcaga 540
||||||||||||||||||||
Sbjct: 475 tgagtcacagaaagctcaga 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k12.g1 MSMg01no501_k12.g1 CHROMAT_FILE:
MSMg01no501_k12.g1 PHD_FILE: MSMg01no501_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:31 2005
(594 letters)
>mm_chr6_96120983_96121976
Length = 994
Score = 1089 bits (563), Expect = 0.0
Identities = 587/595 (98%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 tgggaaaagagtcacaggtatagaaaatttccaccagaaagaggaaaaccctcgaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaaaagagtcacaggtatagaaaatttccaccagaaagaggaaaaccctcgaatttg 260
Query: 61 gccaggtaactagctatgtggcagctcttagaatagaataacaggatggctaagttatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaggtaactagctatgtggcagctcttagaatagaataacaggatggctaagttatga 320
Query: 121 gctagtcaagggatgatccaaattatttggcctaggcatccactcatacattggaagtcc 180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagtcaagggataatccaaactatttggcctaggcatccactcatacattggaagtcc 380
Query: 181 cagtgtcagtattctggactcctagggatgggaggggaaaacatgagcatacagaaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgtcagtattctggactcctagggatgggaggggaaaacatgagcatacagaaagca 440
Query: 241 tctaactatttccaatgcgatgctcacatctcactcaggaaacacaaatgacagttggct 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaactatagccaatgcgatgctcacatctcactcaggaaacacaaatgacagttggct 500
Query: 301 cctggcttttccaggagccagccaacttggaaaggaagagatgtttgtctgtcatgtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggcttttccaggagccagccaacttggaaaggaagagatgtttgtctgtcatgtctt 560
Query: 361 aatattatccttaaacttcctcagaattttacctttcaacagtatatgtgtacatgtcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatattatccttaaacttcctcagaattttacctttcaacagtatatgtgtacatgtcca 620
Query: 421 tatgtgtagcctccctcagccttgaagcaggctgatccagactttgaccttgctgccact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgtgtagcctccctcagccttgaagcaggctgatccagactttgaccttgctgccact 680
Query: 481 gagaaggaaattacctagggtggagttttccgacctagatggctctattgttctgtcacc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaggaaattacctagggtggagttttccgacctagatggctctattgttctgtcacc 740
Query: 541 tgccactgctacctgct-aggaggcccctgagatattctggaggaacatcctatc 594
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct: 741 tgccactgctacctgctgag-aggtccctgagatattctggaggaacatcctatc 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
