BAC Information

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BAC

Clone NameMSMg01-501L02
Chromosome6 (Build37)
Map Location 35,472,191 - 35,472,362
singlet/doubletsinglet
Overlap geneMtpn
Upstream geneLOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneLOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501L02.T7 (MSMg01no501_l02.b1)MSMg01-501L02.TJ (MSMg01no501_l02.g1)
ACCAG577227AG577228
length613713
length of high quality
(start - end)
174 (50 - 223)169 (62 - 230)
definitionCHROMAT_FILE: MSMg01no501_l02.b1 PHD_FILE: MSMg01no501_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:34 2005CHROMAT_FILE: MSMg01no501_l02.g1 PHD_FILE: MSMg01no501_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTAAATCGAGAAGAGCGCGGAATTCATGAGGCATGCCTAGAACA
TCTCCTGCCTTGAACACTCTGTAATTTAAGGATTTATGACATTGTTTTGG
TGATCATGATAGTCAAAGAGATGACTTTTCACCACATCAGGTGATTGGGC
CTAATTTGGCATTCTTCTCTTCCTCCTCATTGGCATTTTGACCCCTCTTC
TTCTTCTCTGAANTCACAATGGGNNCATNTNTTCCTNAACCAAGGTTTAA
AGNNTTGGGGGGGGAAAAAAAAAAAAAGGGAAAATTTAAGGGGGGGGTGT
TTTTCTTCCCCCCGGGGAAAAAAAAGGNAAAAAAAAACCCCTCTTTAAAA
AAAAAAACTCTTTTGGGGGGGTTAAAAAAAAAATTTTCCCCAAAAAGGTG
GGGGGGGGGNNCCNNTTAAACCTTTTTTTCTTCTTTATTTTTTCATGTTA
TTTAAAATATATTTATAATTTTTACAAAGATTAATGTGTTCATAAGAAAA
AATTAAAATAAATAACAAAATTAAAATAATAGTAAAGATAAAAATTAAAT
AATAATATGAGCTATTTTTTTACTTTTATAATTCGCTTATTTGTATTTTT
TAAAACACCCGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
GAAAAATACAGTGAAAGCAGGGTGACAGTTCAGAGTTGGAGTAAGGATAA
GGTGAAAGGGACAACACCTGTGGAAAGTTATTTTAGTGTGTGTGTGTTTG
TACATGCTTGCGCGCGCGCACACGCACGCACGCACACACACACACACACA
CACACACACACACACACACACACACACACAGGAAGGTACCATGTGACGGC
CTTGAGAGCAGGAAAACAGTCCATTTTCTTTGGACAGTATGTCTCATTGG
CCTGTATTTCTTTAACTGGGTTAGGCTGGTGTCAGCGAGCTGTGGGATGC
TATGCTCAGTCTCCATAGCGATAGGATTACAGACGCAGGCTGCCATACCC
AGATACCCAGGTTGGTTTTTTTTTTTTTGTTTTTGGTTTTTTTGCTTTTT
GCCTTTTTTTTTTAACATGGAATCTGGGGCAACTCACGCCCTCATGCTTG
CACGGGAAGCACTTTATCAACCGAGCTCATCTGAAGGTGACAAAAATTGT
GTCCTCTTTTAATTAGAAAAAAAATGTTTAAGATACAGGGAAAAAATAAA
CGCCAACTGTGTGGAAGAAAGTTGAAAAAAACTTGGATAGGACACCCCAT
CACTTTGTTGCTTCCGAACACAAGACTCTGAACATTACATCCTAGCTCCT
TCCGAACTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_l02.b1 MSMg01no501_l02.b1 CHROMAT_FILE:
MSMg01no501_l02.b1 PHD_FILE: MSMg01no501_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:34 2005
         (174 letters)



>mm_chr6_35471991_35472563
          Length = 573

 Score =  327 bits (169), Expect = 3e-94
 Identities = 172/173 (99%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcctgccttgaacactctgtaatttaaggatttatgacattgttttggtgatcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atctcctgccttgaacactctgtaatttaaggatttatgacattgttttggtgatcatga 313

                                                                       
Query: 61  tagtcaaagagatgacttttcaccacatcaggtgattgggcctaatttggcattcttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tagtcaaagagatgacttttcaccacatcaggtgattgggcctaatttggcattcttctc 253

                                                                
Query: 121 ttcctcctcattggcattttgacccctcttcttcttctctgaantcacaatgg 173
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 252 ttcctcctcattggcattttgacccctcttcttcttctctgaa-tcacaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 573
Length adjustment: 8
Effective length of query: 166
Effective length of database: 565
Effective search space:    93790
Effective search space used:    93790
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)