BAC Information

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BAC

Clone NameMSMg01-501M14
Chromosome6 (Build37)
Map Location 74,660,392 - 74,661,040
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501M14.T7 (MSMg01no501_m14.b1)MSMg01-501M14.TJ (MSMg01no501_m14.g1)
ACCAG577298AG577299
length712692
length of high quality
(start - end)
649 (62 - 710)614 (57 - 670)
definitionCHROMAT_FILE: MSMg01no501_m14.b1 PHD_FILE: MSMg01no501_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:40 2005CHROMAT_FILE: MSMg01no501_m14.g1 PHD_FILE: MSMg01no501_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATGCGCGGAATTCTCTTCC
ATCCTACTTTCATGCTCATTTCTCATCCCTTGATTTTAGAGACATATTTG
TGGATCACTGCATTTCAGTGTGCTTATTGTCATGAAACTACTTTGGCAAA
AAATCTCCAAGCCATTTTACTAACATTCTATAGATTGCCAAGTTATTAGT
TCTGAAGGTTTTTCCTCCATGGGTTGCTATATTTGGGTTTCTGAATTATA
ACTGTTCTTGCTCCATTCTTCACAATTTTTTGAACGTGTGAATTCCTGGA
CACCACATAATTTTCTTTCACTATTTTCTGCAGGACCCTGCTATGGCTTC
TCAAAGAAAGAAAGAGGAAACTTAGACCTGTACCATACTTATGTAAATAT
CATTTTCAGCATAGAAAATAAAAGGGAAATGGACATTTGACAAGTCATTG
ACTAAGATTAACAGGTTGACTGAAGAGTTTGCACTTTAATTCCTGCTTCT
TTATTACCTATGCCAAGCTAGATTCCAACATCATATACATCCACATATTA
AAATGTGTCAAGGATTATTAATAGGTAGAGCAAGATGCATTTGTTATTAT
CTACTTCTGAACCAGCATTTTTCTTAATGTGGTATGATTAGTATCTGGGC
TCACTGCTCCCAGAGGGAAAACTCCAGTTAACCACTGGGGAAAACGGGCT
TCCTCACAGGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCTTCAGCTCTATACCCAATTTTAATTGACTTATATGGATTG
TTTTTTGATATTTGCTTTCTTGAGTTCTTTATATAATTTGGATATTAGCC
CTCTGTTGGATGTGGAGTTGGTGAAACTCTTTTCACATTCTCTAGACTGA
TGGTTTGTCCTGTTGATGGTGCCCTTGGTCTTACAGAAGTTTCAGTTTCT
TGAGGTCCCCTTTATTAGTTACTGATCTTAGTGCCTGCACTATAACTATT
CTGTACAGGAAGGCATATCCTGTGCCAGGCCATTCAAGCCTATTCCCAAC
TTTCTCTTCTATTAAGTTCAGTGGATCTAAGTGGATCTAAGCACTCACTC
TGTAGGCCAGACTGCCCTTGAACTCAGAGATCTGCCTGCTTCTGCCTCCC
AAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCGGCATATCTATTCT
TACTTTTCTACATGTAGCAAAACAGTTGGAACAGCACCAGAAATGAAGAT
ACTGTCTTATGTGTGTACTTATGACCTCATTATCAAAAATCAGATCTGCA
TAGGTGTGTGGATTTATCTACAATGCAATTTCATTGTTTGCTGTATCTGT
TTTTATGACATTACCTTGCAAATTTAAGAAAAGATAGTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_m14.b1 MSMg01no501_m14.b1 CHROMAT_FILE:
MSMg01no501_m14.b1 PHD_FILE: MSMg01no501_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:40 2005
         (649 letters)



>mm_chr6_74660192_74661240
          Length = 1049

 Score = 1208 bits (625), Expect = 0.0
 Identities = 643/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctcatttctcatcccttgattttagagacatatttgtggatcactgcatttcagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctcatttctcatcccttgattttagagacatatttgtggatcactgcatttcagtgt 260

                                                                       
Query: 61  gcttattgtcatgaaactactttggcaaaaaatctccaagccattttactaacattctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttattgtcatgaaactactttggcaaaaaatctccaagccattttactaacattctat 320

                                                                       
Query: 121 agattgccaagttattagttctgaaggtttttcctccatgggttgctatatttgggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agattgccaagttattagttctgaaggtttttcctccatgggttgctatatttgggtttc 380

                                                                       
Query: 181 tgaattataactgttcttgctccattcttcacaattttttgaacgtgtgaattcctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaattataactgttcttgctccattcttcacaattttttgaacgtgtgaattcctggac 440

                                                                       
Query: 241 accacataattttctttcactattttctgcaggaccctgctatggcttctcaaagaaaga 300
           |||||||||  | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accacataacatgcattcactattttctgcaggaccctgctatggcttctcaaagaaaga 500

                                                                       
Query: 301 aagaggaaacttagacctgtaccatacttatgtaaatatcattttcagcatagaaaataa 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggggaaacttagacctgtaccatacttatgtaaatatcattttcagcatagaaaataa 560

                                                                       
Query: 361 aagggaaatggacatttgacaagtcattgactaagattaacaggttgactgaagagtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 aagggaaatggacatttgacaagtcattgactaagattaacaggtggactgaagagtttg 620

                                                                       
Query: 421 cactttaattcctgcttctttattacctatgccaagctagattccaacatcatatacatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactttaattcctgcttctttattacctatgccaagctagattccaacatcatatacatc 680

                                                                       
Query: 481 cacatattaaaatgtgtcaaggattattaataggtagagcaagatgcatttgttattatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacatattaaaatgtgtcaaggattattaataggtagagcaagatgcatttgttattatc 740

                                                                       
Query: 541 tacttctgaaccagcatttttcttaatgtggtatgattagtatctgggctcactgctccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacttctgaaccagcatttttcttaatgtggtatgattagtatctgggctcactgctccc 800

                                                            
Query: 601 agagggaaaactccagttaaccactggggaaaacgggcttcctcacagg 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agagggaaaactccagttaaccactggggaaaacgggcttcctcacagg 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)