BAC Information

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BAC

Clone NameMSMg01-502E13
Chromosome6 (Build37)
Map Location 48,211,706 - 48,392,958
singlet/doubletdoublet
Overlap geneLOC665990, Krba1, Zfp467
Upstream geneCntnap2, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneSspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502E13.T7 (MSMg01no502_e13.b1)MSMg01-502E13.TJ (MSMg01no502_e13.g1)
ACCAG577675AG577676
length708750
length of high quality
(start - end)
244 (55 - 298)414 (324 - 737)
definitionCHROMAT_FILE: MSMg01no502_e13.b1 PHD_FILE: MSMg01no502_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005CHROMAT_FILE: MSMg01no502_e13.g1 PHD_FILE: MSMg01no502_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(48,392,715 - 48,392,958)(48,211,706 - 48,212,119)
sequence
CCGCTAATACGACTCACAATTCAAAGAGGATCCGCGGAATTCTTCCTTTT
CTTTTTTTTCCCTATTTCAAACTATCCAATTTCTTTTCTTTTTTCTCCCC
TCGATTAAAAGGGCCGAGCTTAATACCTGGCCAGACTGCTGGGGAGCTTG
GGCAGTCCTTTATCCATACAGACAAGAGGTACCTTTCTCCCCAGACCGGC
TGGGAAAATGCCCCATCGCTGGTACCAGTTCAATACTAGAAGCTTCACTT
GAACTCATCCCTCTGCCTATAACAGGATTCTCAGTGGGACAGCCAGAGAT
GTTTCCCCAGAGTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGA
TGTCATCCAGAGGAGAGAGCACACTGCACTCCTGCTCAGGTAAGTGGGTA
CCATGGAGTGTGGCTCTGGAGGGAATATTCCTTCTTCCACAAGCTATCTG
TTAAGCACCTACTCTGCTGGAAGCTATTCCGGACAGTTGTAAAACCTTAG
GCACTAAATAGACCTAGGTCCTTCCCTGCGAGGAACTTAATCTTAGAATG
GGCAGCAGTCAGCCAACAAGAAATGTAAGCATGCTAAAAATTGTAAGCCA
CCGTAGAAGACAGAAAGTGCTATAGGGGTGATAACAGCACAGTGAGAGGG
ACCAAGTGACCTGCTGTGGGCCGAGGCCAGAATGCCTAAAGCGAGATCTA
GCCTGGCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCTAAGAAAAGCCATATGCTGAGAACCACTGATGGTTTT
CTCTAATAAAACCTAGCTTTTATAGGTTTAGCAAACTCACTATACATTCT
CAAAACCCTGAAGACTTGCTAACTAGAAAGACTTGAGATTCATGAACACA
AGAACCAGCTGTCACATGAAGGATCTGATGAGCAATAACACAGCTGTATT
TTCAATGGGTTGACTCTCCAGCCATGAGTCAAGAGAGAAAGTGCATCTAT
ACTATGAATGTGGTCAGTTANTCCAAAATCCCATGAAAAGGGGGCACCTG
GATTTGAACCAGGGACCTCTTGATCTGCAGTCAAATGCTCTACCCCTGAG
CTATACCCCCTGATGCTAATAGAAGGCTTAATTAATATCCTTCACTTCCA
GAGTTACACCCACATCACTTGTAACCTATGTATCATCCTTTGAGAACTTC
CAGGATGAGTCAGAGAAAGTACATCACTCTCCTGCATAAAAAGTCACAGG
CCCCTCTGAAATGGAAATGTAAGAATTGTTTGGAAAAGTGGTTGGATGGT
GTTTTGCTTGGGCAAAGGCATGAAAGTGGACATAGATGTAAAAGGCTCAT
GTATACTTTGGAAGGAACATTTCACTGAAGCAGACACAGGATAGAGGATG
TTCTGCTAAGGCAAGCACATCAAAGAACACATGTTGAAGGATTCTTTGCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_e13.b1 MSMg01no502_e13.b1 CHROMAT_FILE:
MSMg01no502_e13.b1 PHD_FILE: MSMg01no502_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:16 2005
         (244 letters)



>mm_chr6_48392515_48393158
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttccctatttcaaactatccaatttcttttcttttttctcccctcgattaaaagggc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttccctatttcaaactacccaatttcttttcttttttctcccctcgattaaaagggc 385

                                                                       
Query: 61  cgagcttaatacctggccagactgctggggagcttgggcagtcctttatccatacagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgagcttaatacctggccagactgctggggagcttgggcagtcctttatccatacagaca 325

                                                                       
Query: 121 agaggtacctttctccccagaccggctgggaaaatgccccatcgctggtaccagttcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaggtacctttctccccagaccggctgggaaaatgccccatcgctggtaccagttcaat 265

                                                                       
Query: 181 actagaagcttcacttgaactcatccctctgcctataacaggattctcagtgggacagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actagaagcttcacttgaactcatccctctgcctataacaggattctcagtgggacagcc 205

               
Query: 241 agag 244
           ||||
Sbjct: 204 agag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no502_e13.g1 MSMg01no502_e13.g1 CHROMAT_FILE:
MSMg01no502_e13.g1 PHD_FILE: MSMg01no502_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:16 2005
         (414 letters)



>mm_chr6_48211506_48212319
          Length = 814

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatcccatgaaaagggggcacctggatttgaaccagggacctcttgatctgcagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatcccatgaaaagggggcacctggatttgaaccagggacctcttgatctgcagtca 260

                                                                       
Query: 61  aatgctctacccctgagctataccccctgatgctaatagaaggcttaattaatatccttc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aatgctctacccctgagctataccccctaatgctaatagaaggcttaattaatatccttc 320

                                                                       
Query: 121 acttccagagttacacccacatcacttgtaacctatgtatcatcctttgagaacttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttccagagttacacccacatcacttgtaacctatgtatcatcctttgagaacttccag 380

                                                                       
Query: 181 gatgagtcagagaaagtacatcactctcctgcataaaaagtcacaggcccctctgaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgagtcagagaaagtacatcactctcctgcataaaaagtcacaggcccctctgaaatg 440

                                                                       
Query: 241 gaaatgtaagaattgtttggaaaagtggttggatggtgttttgcttgggcaaaggcatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatgtaagaattgtttggaaaagtggttggatggtgttttgcttgggcaaaggcatga 500

                                                                       
Query: 301 aagtggacatagatgtaaaaggctcatgtatactttggaaggaacatttcactgaagcag 360
           |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||
Sbjct: 501 aagtggacatagatgtaaaaggctcaggtagactttggaaggaacatttcacagaagcag 560

                                                                 
Query: 361 acacaggatagaggatgttctgctaaggcaagcacatcaaagaacacatgttga 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacaggatagaggatgttctgctaaggcaagcacatcaaagaacacatgttga 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)