Query= MSMg01no502_l20.b1 MSMg01no502_l20.b1 CHROMAT_FILE:
MSMg01no502_l20.b1 PHD_FILE: MSMg01no502_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:51 2005
(624 letters)
>mm_chr6_82805880_82806903
Length = 1024
Score = 532 bits (275), Expect = e-155
Identities = 311/323 (96%), Gaps = 6/323 (1%)
Strand = Plus / Plus
Query: 1 ttgaacctagagtctgttttctgaaccttcaactgtacaaccaaggtctctcccaagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaacctagagtctgttttctgaaccttcaactgtacaaccaaggtctctcccaagccc 260
Query: 61 acacagtctttg-cgcgatgtgagcatggtgtcctactacgcagcagtgatacctgggag 119
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacagtctttgtc-cgatgtgagcatggtgtcctactacgcagcagtgatacctgggag 319
Query: 120 ccgccaccgttgggaaaagctctgctttctcctgcagatgcagcccacacctgggcacat 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgccaccgttgggaaaagctctgctttctcctgcagatgcagcccacacctgggcacat 379
Query: 180 agccacgggcagagggtgggggacttgagggcctactaggtcagcctctgtggcagtcca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agccacgggcagagggtgggggacttgagggcctactaggtcagcctctgtggcagtcca 439
Query: 240 cacgctgcatacctgtgtgtggatgcccgagctcagctgccaccctgt-gtgtggac-gc 297
||||||||||||||||||||||| ||||||||||||||||| |||||| | | |||| ||
Sbjct: 440 cacgctgcatacctgtgtgtggacgcccgagctcagctgccgccctgtagggaggactgc 499
Query: 298 c-cgagctcagctgccaccctgt 319
| | |||||||||||| ||||||
Sbjct: 500 cac-agctcagctgccgccctgt 521
Score = 180 bits (93), Expect = 3e-49
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 529 taactgattcttgttcacaggggttggaatttcaagaatggaaactagtaaaatcccttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taactgattcttgttcacaggggttggaatttcaagaatggaaactagtaaaatcccttc 594
Query: 589 cccaccctgcagtccccaggccagaactggaga 621
|||||||||||||||||||||||||||||||||
Sbjct: 595 cccaccctgcagtccccaggccagaactggaga 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_l20.g1 MSMg01no502_l20.g1 CHROMAT_FILE:
MSMg01no502_l20.g1 PHD_FILE: MSMg01no502_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:51 2005
(605 letters)
>mm_chr6_82982189_82983194
Length = 1006
Score = 1149 bits (594), Expect = 0.0
Identities = 603/606 (99%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 1 tttgatc-caaggggtcgagctctagagggggtcgaggcggctctcgccgtctagactgc 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tttgatcacaaggggtcgagctctagagggggtcgaggcggctctcgccgtctagactgc 747
Query: 60 aagatgatacgcctggctgaatgtgtgagcgtggtgccggtgactgtggagagtccccct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aagatgatacgcctggctgaatgtgtgagcgtggtgccggtgactgtggagagtccccct 687
Query: 120 gagcccggcgctgctgccttccgcctggacaccgcacagcgctcgcacctgctggcggcg 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gagcccggcgctgttgccttccgcctggacaccgcacagcgctcgcacctgctggcggcg 627
Query: 180 gacgccgtatccagcaccgcctgggtgcagactttatgcagaaccgcctttccggtgagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gacgccgtatccagcaccgcctgggtgcagactttatgcagaaccgcctttccggtgagt 567
Query: 240 gactgggggtgggcatctctgggcttaagggacactgcgaggatggagctattatagagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gactgggggtgggcatctctgggcttaagggacactgcgaggatggagctattatagagg 507
Query: 300 cactggacttcttgcatctaccctagacccaagagaattatatataattcttccatgttc 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cactggacttcttgcacctaccctagacccaagagaattatatataattcttccatgttc 447
Query: 360 ccttttctgcagaaaggcggctgggctttggcgcagacggagaaccaacctaagttttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccttttctgcagaaaggcggctgggctttggcgcagacggagaaccaacctaagttttct 387
Query: 420 gccttggagatgctggagaattcgctgtacagccccacctgggaaggtagatgtctggca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gccttggagatgctggagaattcgctgtacagccccacctgggaaggtagatgtctggca 327
Query: 480 ggaatggagtgggttgaagaggtgcccttggggagctagtgattggagtcaaccgagtcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaatggagtgggttgaagaggtgcccttggggagctagtgattggagtcaaccgagtcc 267
Query: 540 ctaacttgccccagcgctccttctccttcgtatgtgttcttccaggatcccagttctggg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctaacttgccccagcgctccttctccttcgtatgtgttcttccaggatcccagttctggg 207
Query: 600 taacct 605
||||||
Sbjct: 206 taacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
