Query= MSMg01no502_m05.b1 MSMg01no502_m05.b1 CHROMAT_FILE:
MSMg01no502_m05.b1 PHD_FILE: MSMg01no502_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:53 2005
(243 letters)
>mm_chr6_17620024_17620666
Length = 643
Score = 383 bits (198), Expect = e-111
Identities = 223/243 (91%), Gaps = 18/243 (7%)
Strand = Plus / Minus
Query: 1 caactgtttgagcattagtcttctactaactgaagtgctctaactgcatggtctcagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caactgtttgagcattagtcttctactaactgaagtgctctaactgcatggtctcagtct 497
Query: 61 aacgagtggatgtgctccagtgtatgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 120
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 496 aacgagtggatgtgctccagtgtatgaaa------------------gtgtgtgtgtgtg 455
Query: 121 tgtgtgtgtgttctcantcacactacaaaacaaagttgaggttaaactagctcatttttg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgtgtgtgtgttctcagtcacactacaaaacaaagttgaggttaaactagctcatttttg 395
Query: 181 ttatcttatacccaaactaaggattaaagtatcttaatgtcttacaggacatgtcctagt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttagcttatacccaaactaaggattaaagtatcttaatgtcttacaggacatgtcctagt 335
Query: 241 tca 243
|||
Sbjct: 334 tca 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no502_m05.g1 MSMg01no502_m05.g1 CHROMAT_FILE:
MSMg01no502_m05.g1 PHD_FILE: MSMg01no502_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:53 2005
(396 letters)
>mm_chr6_17495563_17496358
Length = 796
Score = 766 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Plus
Query: 1 ttgtcatttcaagccccaaagtgacccgtgagatttatgtgcttctctgtggaattaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtcatttcaagccccaaagtgacccgtgagatttatgtgcttctctgtggaattaccc 260
Query: 61 tgtgcagctgacctagatcaatggcctgttcctaccgcctctggaagtacaataagggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcagctgacctagatcaatggcctgttcctaccgcctctggaagtacaataagggca 320
Query: 121 gggtctgcctgtgttcatttctttagtggagccgtggaatataaagatgtgctttctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtctgcctgtgttcatttctttagtggagccgtggaatataaagatgtgctttctttc 380
Query: 181 agatactcctatccctagaatctcaggccaacctatcttgaaatccatgaggcactacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatactcctatccctagaatctcaggccaacctatcttgaaatccatgaggcactacag 440
Query: 241 gaaaagcagttttggacaccctcaagagcttggaaaacaaagttgttaggagctgttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaagcagttttggacaccctcaagagcttggaaaacaaagttgttaggagctgttcct 500
Query: 301 tgtccataagaaagacagtaataggttttgatagctctctcctctaagtaacagcctatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtccataagaaagacagtaataggttttgatagctctctcctctaagtaacagcctatt 560
Query: 361 taataaattactactcattaagtcttgatatgaaaa 396
||||||||||||||||||||||||||||||||||||
Sbjct: 561 taataaattactactcattaagtcttgatatgaaaa 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
