BAC Information

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BAC

Clone NameMSMg01-502M21
Chromosome6 (Build37)
Map Location 71,413,731 - 71,414,078
singlet/doubletsinglet
Overlap genenone
Upstream geneIgk, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a
Downstream geneLOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M21.T7 (MSMg01no502_m21.b1)MSMg01-502M21.TJ (MSMg01no502_m21.g1)
ACCAG578073AG578074
length745697
length of high quality
(start - end)		574 (37 - 610)435 (66 - 500)
definitionCHROMAT_FILE: MSMg01no502_m21.b1 PHD_FILE: MSMg01no502_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:56 2005CHROMAT_FILE: MSMg01no502_m21.g1 PHD_FILE: MSMg01no502_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTG
ACTTAATTGTAGCTTCCAGAGTGGGAACATATATTCCTAAAGGCATACAA
AATATTTATTAGACATATACCAAAAATAATTTACTAAAAATGGCATGTGT
ATATAAATGTTCTTAAGATAAAGAAGAAACTGGGGCTGGTGAGATGGCTC
AGTGGGTAAGAGCACCCGACTGCTCTTCCCCGAAGGTCCAGAGTTCAAAT
CCCAGCAACCACATGGTGGCTCACAACCACCCGAAATGAGATCTGACGCC
CTCGTCTGGTGTGTCTGAGGACAGCTACGGTGTACTTACATGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAA
AGAAGAAACTGAGTTTAGTAATGTTTACAGACTGACAATATCATAAACAT
TTTTTCTTATTTTATATTTTTTCATACGTTGAAACATTTGAGTTGGCTTC
CAAAATGGCTGATCCTGGAAGTGTTTTGACTTTGGGTTATATTGACCAGA
TTTGCATCCATGGGACAAGATACTTGAGGATAATTTGTTGAAAAGGAAGA
AAAGTTTTTGGCTCATGGCTTCTGAGAATTCAGTCCACAGGTTCTTTGTC
CCATGGCTTTGGACCTGTGGTGTCACAGTAAATCATGGCCAAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACACCTAGTCACTGCCCATCTCAGGGCGTAGTAAT
GGGGTGATGGGAGAGCAACTAATCAGGTGCTGTCACGCCACATCAGGTGC
TGAAATGTCACGCTGCAGGCTATATAAGCAGCGCCATTTTCCAGGTTCCG
GGTCTTCCTCCTGAGAAGTAAGCAATAAAGCCTTTTGCCGCAGAAGATTC
TGGTTGTCCTGAGTGTGTTCTTGCCGGCGGGGACAAAAGCTCAGGCAATA
ACCCACCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTT
CTCATGTACTGGGGCATATAAAGTTTGCAAGACCTAGGGGCCTCTCTTTC
CAATGATGGCCGACTGGGCCATATTCTGCTACATATGCGGCTAGAGACAA
GAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTCCCACCTATAGGGTT
GCAGACCCCTTCAGCTCCTTGTGTACTTTCTCTAGCTTCTCCATTGGGGG
TGGGCAGCACTTTCCTGTACCTGGATAATGAACTCACAATGGGGGTTTAA
GGTTTTTTTTTTCCCCTTTAAAAACTGAAGGAATAAACTTCCTGTGTTCT
TTGGGAAAAGCACCTTAGGTTCAAAAAAAGGTTTTGGTTTAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m21.b1 MSMg01no502_m21.b1 CHROMAT_FILE:
MSMg01no502_m21.b1 PHD_FILE: MSMg01no502_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:56 2005
         (574 letters)



>mm_chr6_71413528_71414502
          Length = 975

 Score =  642 bits (332), Expect = 0.0
 Identities = 344/348 (98%), Gaps = 1/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgacttaa-ttgtagcttccagagtgggaacatatattcctaaaggcatac 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgactaaaattgtagcttccagagtgggaacatatattcctaaaggcatac 263

                                                                       
Query: 63  aaaatatttattagacatataccaaaaataatttactaaaaatggcatgtgtatataaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaatatttattagacatataccaaaaataatttactaaaaatggcatgtgtatataaat 323

                                                                       
Query: 123 gttcttaagataaagaagaaactggggctggtgagatggctcagtgggtaagagcacccg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcttaagataaagaagaaactggggctggtgagatggctcagtgggtaagagcacccg 383

                                                                       
Query: 183 actgctcttccccgaaggtccagagttcaaatcccagcaaccacatggtggctcacaacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgctcttccccgaaggtccagagttcaaatcccagcaaccacatggtggctcacaacc 443

                                                                       
Query: 243 acccgaaatgagatctgacgccctcgtctggtgtgtctgaggacagctacggtgtactta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acccgaaatgagatctgacgccctcgtctggtgtgtctgaggacagctacggtgtactta 503

                                                           
Query: 303 catgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 350
           ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 504 catgaaagaaagaaagaaagaaagaaagaaagaaagagagagagaaag 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space:   544260
Effective search space used:   544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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