Query= MSMg01no504_a21.b1 MSMg01no504_a21.b1 CHROMAT_FILE:
MSMg01no504_a21.b1 PHD_FILE: MSMg01no504_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:32 2005
(634 letters)
>mm_chr6_32756981_32758015
Length = 1035
Score = 804 bits (416), Expect = 0.0
Identities = 621/804 (77%), Gaps = 175/804 (21%)
Strand = Plus / Plus
Query: 5 gaattcacccgctttctctacttcttttaattttttttccttgtttgtttgctttgagag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 gaattcacccgctttttctacttcttttaattttttttccttgtttgtttgctttgagag 92
Query: 65 agggtctctcaggttgttctgaaactcacttatgcagaccattctggcagacatccaact 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 93 agggtctctcaggttgttctgaaactcacttatgcagaccattctgacagacatccaact 152
Query: 125 gcttgtctcttgagtgctggaattaaagacatgagccactatacctggccatcttgttta 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 153 gcttgtctcttgagtgctggaattaaagtcatgagccactatacctggccatcttgttta 212
Query: 185 cccttcagtccttcctttcccaagcacaagctgctcctcaagcgacctccagccctatcc 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 213 cccttcagtccttcctttcccaagcacaagctgctcctcaagtgacctccagccccatcc 272
Query: 245 ataaccttag-------------------------------------------------- 254
||||||||||
Sbjct: 273 ataaccttagagcatggccaaggggctgggggcgggacacagcataaccttagtgcatgg 332
Query: 254 ------------------------------------------------------------ 254
Sbjct: 333 ccaaggggctgggggcgggacacagcataaccttagtgcatggccaaggggctggaggcg 392
Query: 254 ------------------------------------------------------------ 254
Sbjct: 393 ggacacagcataaccttagtgcatggccaaggggctggaggcgggacacagcataacctt 452
Query: 255 --tgcatggccaaggggctgggggcgggacacagcataaccttagtgcatggccaagggg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agtgcatggccaaggggctgggggcgggacacagcataaccttagtgcatggccaagggg 512
Query: 313 ctgggggcgggacacagcataaccttagtgcatggccaaggggctgggggcgggacacag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctgggggcgggacacagcataaccttagtgcatggccaaggggctgggggcgggacacag 572
Query: 373 ggcagagccacagtcccaaatatgagacccaagaacaaaaccacaagataacactttttt 432
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 573 ggcagagccagagtcccaaatatgagacccaagaacaaaaccacaagagaacactttttt 632
Query: 433 ttttttttctgtgacttcaggagctagcaagacttcccctccctttttaggtgatgctta 492
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttttttt-ctgtgacttcaggagctagcaagacttcccctccctttttaggtgatgctta 691
Query: 493 atggcaatattagaaagcatttaggacaatatactcacaatgtttacttattatacttac 552
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 692 atggcaatattagaaagcatttaggacaatatactcacaatgtttacttattacacttac 751
Query: 553 aacaagcccttaattgatcccttggaaaaaaa--gaccagaaagagatacaggctgtttc 610
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 752 aacaagcccttaattgatcccttggaaaaaaaaagaccagaaagagatacaggctgtttc 811
Query: 611 taattttcccaaggcttcccacca 634
||||||||||||||||||||||||
Sbjct: 812 taattttcccaaggcttcccacca 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_a21.g1 MSMg01no504_a21.g1 CHROMAT_FILE:
MSMg01no504_a21.g1 PHD_FILE: MSMg01no504_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:32 2005
(545 letters)
>mm_chr6_32910536_32911480
Length = 945
Score = 1031 bits (533), Expect = 0.0
Identities = 542/545 (99%)
Strand = Plus / Minus
Query: 1 tctgcttctccaggtaggcaaaaaacaaacaatcaaaaatcaaaaacaaaccaaaaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tctgcttctccaggtaggcaaaaaacaaacaatcaaaaatcaaaaacaaaccaaaaaccc 785
Query: 61 caaacaaacaaaaacaaaccccaaaaaacaaaaacaaaactcagaaatctacaatcttaa 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 784 caaacaaacaaaaacaaacccccaaaaacaaaaacaaaactcagaaatctacgatcttaa 725
Query: 121 tatccttgtggaaatattatattgtgttgattgtgtattgagggtctaaaggtggaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tatccttgtggaaatattatattgtgttgattgtgtattgagggtctaaaggtggaacat 665
Query: 181 gacaaaatggcagaggagattacatccctatcagagatgggaaactttccactgaactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gacaaaatggcagaggagattacatccctatcagagatgggaaactttccactgaactct 605
Query: 241 atgtagaggtgacttgttcactcagactgccatgatcttgttgacaaagtgattagagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atgtagaggtgacttgttcactcagactgccatgatcttgttgacaaagtgattagagaa 545
Query: 301 ggcatcaacggcacatgtaatggggctaaagttgctagggccacttcttagaatactgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggcatcaacggcacatgtaatggggctaaagttgctagggccacttcttagaatactgtc 485
Query: 361 atattttcattttaaatgcccttttgaaagtttatcaggtagcttgaaaacattggctga 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 atattttcattttaaatgcccttttgaaagttcatcaggtagcttgaaaacattggctga 425
Query: 421 gggcatctcagggcgagtggtatcttaaatgttagccctgccacaaatagcttattgaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gggcatctcagggcgagtggtatcttaaatgttagccctgccacaaatagcttattgaca 365
Query: 481 tcctatcacttgggtcgttgtggatatccaggtgagatatggagagcactgagtaaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcctatcacttgggtcgttgtggatatccaggtgagatatggagagcactgagtaaaaat 305
Query: 541 ccata 545
|||||
Sbjct: 304 ccata 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
