BAC Information

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BAC

Clone NameMSMg01-504G13
Chromosome6 (Build37)
Map Location 16,843,709 - 16,920,526
singlet/doubletdoublet
Overlap geneTcfec, EG435881
Upstream geneLOC100041116
Downstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504G13.T7 (MSMg01no504_g13.b1)MSMg01-504G13.TJ (MSMg01no504_g13.g1)
ACCAG579295AG579296
length764767
length of high quality
(start - end)		710 (47 - 756)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no504_g13.b1 PHD_FILE: MSMg01no504_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:00 2005CHROMAT_FILE: MSMg01no504_g13.g1 PHD_FILE: MSMg01no504_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,843,709 - 16,844,413)(16,919,941 - 16,920,526)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTAATATGCTCTCTGAGGGTTTATTTGAAAGAACTAGTTTTCCCCAT
TGCAAACAAATGTCAGTTAGGCAGATCTTGTTGTTTGGGATGAGAAATAA
ATGTCTACTTCCCTATCACAGCTCTGGGACCTCAAATGGGTTAAAGCAGA
CTTAAGAGCACTCTAAACAAAAATATACACAGCTAACCATTCCAGTCTTT
TATCTTCTAATCTTTTTAGATGGCTAGAGCCAAAGAGCTTAAGCAAATAC
TGATGCTGATGTATCAGATCGAGCTACTTCTACCATCAAAATCCTCCAAG
TCTTAAGATAAACAGAGCTTTTTGAGGTCTGTCTCCCTCTTATCTATGCT
CACCTCCTTCTTGCTACTTCTCACAGTGGCCATATGCTAAATTTTTGTGC
TAAGTCTTTTCTTCCATTTTTCAGTTATCTAGGGAGTAGGGAATTATTTT
TCAAGGTACCCTTCCTCCTTCATCTTTCAATGATCTTCTCAAACCCTCAT
CCTCTCAGGGAGTTCATCTACACTTTTAACATAACACTTCTTTGTTTATG
TAATTCTGGGAACACCTAAATGGCTCATTGGCAGATGCGACCACCATTCT
TAGCTTATTAACTGGCATGGTGTCCAGCTTCTGCGGCAGATGGTGTCATT
GGTGGACATGTTGTGCAGGCCAGTGACTAGCTTCTCTCTGTCCAGCATAA
GAGCAGAGATATGN

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTATATTTGTGAATTTTAT
TTTTCGAACTTTGTTTTCCCCTGTATTTATTTGGATAGCATGTTTTAAAT
GTACTATCTAGAGACATTTAAATGTGTTGAAAACCAATGATTTTTGAGAT
TTTTGTATTCACATTTGGCAGATATTAACTACTTCAAGTCGTTTTCCAAA
TTGGCTCTCTTCAGACAATCTTAAAAGACAGACGTCTGAAGCCTGAGAAT
TACTTTCAATACATCATATTTTTAACTTTGAGAAAGGTTGGTTATGCTGA
ACTCTTTTAATCTACTCTTTATGAGGATCAGTTTTAGTAATGATAAGTCT
ATTAGTTAATCACAAAGATTTATCAGTGAAACCATTACAAGGATTTTTGA
GGACTGCTTTTTAGTTCAATATTTGTGAAGATCATGTAAGGACAATACAT
GACATATTCCATTTTATAAAATGATGCTTTAATGTTCTAACCAATTGCCA
CAAAACAGAACTACATTTTTAGTTTCATAAGCTGGAAATAAAGATCAATT
ATCAATGGTTTAGATAGAGAAATGCAGACTTCCCTCATAGAGTAACTCTA
GTTTCTGACTATAGATAAGCCTCAGCTGGGATCTTAATAATTTCTACAAC
ACATTTGTCTTTTTGTGNCTATGTTCTCTGTCTCTGTCCTCCAGCATCCA
AGGTTATGACTGTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_g13.b1 MSMg01no504_g13.b1 CHROMAT_FILE:
MSMg01no504_g13.b1 PHD_FILE: MSMg01no504_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:00 2005
         (710 letters)



>mm_chr6_16843504_16844613
          Length = 1110

 Score = 1286 bits (665), Expect = 0.0
 Identities = 695/705 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattaatatgctctctgagggtttatttgaaagaactagttttccccattgcaaacaaat 65
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattaatatgcacagtgagggtttatttgaaagaactagttttccccattgcaaacaaat 265

                                                                       
Query: 66  gtcagttaggcagatcttgttgtttgggatgagaaataaatgtctacttccctatcacag 125
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 gtcagttgggcagatcttgttgtttgggatgagaaataaatgtctacttccctatctcag 325

                                                                       
Query: 126 ctctgggacctcaaatgggttaaagcagacttaagagcactctaaacaaaaatatacaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctgggacctcaaatgggttaaagcagacttaagagcactctaaacaaaaatatacaca 385

                                                                       
Query: 186 gctaaccattccagtcttttatcttctaatctttttagatggctagagccaaagagctta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctaaccattccagtcttttatcttctaatctttttagatggctagagccaaagagctta 445

                                                                       
Query: 246 agcaaatactgatgctgatgtatcagatcgagctacttctaccatcaaaatcctccaagt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcaaatactgatgctgatgtatcagatcgagctacttctaccatcaaaatcctccaagt 505

                                                                       
Query: 306 cttaagataaacagagctttttgaggtctgtctccctcttatctatgctcacctccttct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttaagataaacagagctttttgaggtctgtctccctcttatctatgctcacctccttct 565

                                                                       
Query: 366 tgctacttctcacagtggccatatgctaaatttttgtgctaagtcttttcttccattttt 425
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgctatttctcacagtggccatatgctaaatttttgtgctaagtcttttcttccattttt 625

                                                                       
Query: 426 cagttatctagggagtagggaattatttttcaaggtacccttcctccttcatctttcaat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagttatctagggagtagggaattatttttcaaggtacccttcctccttcatctttcaat 685

                                                                       
Query: 486 gatcttctcaaaccctcatcctctcagggagttcatctacacttttaacataacacttct 545
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gatcttctcacaccctcatcctctcagggagttcatctacacttttaacataacacttct 745

                                                                       
Query: 546 ttgtttatgtaattctgggaacacctaaatggctcattggcagatgcgaccaccattctt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgtttatgtaattctgggaacacctaaatggctcattggcagatgcgaccaccattctt 805

                                                                       
Query: 606 agcttattaactggcatggtgtccagcttctgcggcagatggtgtcattggtggacatgt 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 806 agcttattaactggcatggtgtccagcttctgcggcagatggtgtcattggtggacacgt 865

                                                        
Query: 666 tgtgcaggccagtgactagcttctctctgtccagcataagagcag 710
           ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tgttcgggccagtgactagcttctctctgtccagcataagagcag 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no504_g13.g1 MSMg01no504_g13.g1 CHROMAT_FILE:
MSMg01no504_g13.g1 PHD_FILE: MSMg01no504_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:00 2005
         (586 letters)



>mm_chr6_16919741_16920726
          Length = 986

 Score = 1087 bits (562), Expect = 0.0
 Identities = 580/586 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttatatttgtgaattttatttttcgaactttgttttcccctgtatttatttggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 catatttatatttgtgaattttatttttcgaactttgttttcccctgtatttatttggat 727

                                                                       
Query: 61  agcatgttttaaatgtactatctagagacatttaaatgtgttgaaaaccaatgatttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agcatgttttaaatgtactatctagagacatttaaatgtgttgaaaaccaatgatttttg 667

                                                                       
Query: 121 agatttttgtattcacatttggcagatattaactacttcaagtcgttttccaaattggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agatttttgtattcacatttggcagatattaactacttcaagtcgttttccaaattggct 607

                                                                       
Query: 181 ctcttcagacaatcttaaaagacagacgtctgaagcctgagaattactttcaatacatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctcttcagacaatcttaaaagacagacgtctgaagcctgagaattactttcaatacatca 547

                                                                       
Query: 241 tatttttaactttgagaaaggttggttatgctgaactcttttaatctactctttatgagg 300
            |   | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaagtgaactttgagaaaggttggttatgctgaactcttttaatctactctttatgagg 487

                                                                       
Query: 301 atcagttttagtaatgataagtctattagttaatcacaaagatttatcagtgaaaccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atcagttttagtaatgataagtctattagttaatcacaaagatttatcagtgaaaccatt 427

                                                                       
Query: 361 acaaggatttttgaggactgctttttagttcaatatttgtgaagatcatgtaaggacaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acaaggatttttgaggactgctttttagttcaatatttgtgaagatcatgtaaggacaat 367

                                                                       
Query: 421 acatgacatattccattttataaaatgatgctttaatgttctaaccaattgccacaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acatgacatattccattttataaaatgatgctttaatgttctaaccaattgccacaaaac 307

                                                                       
Query: 481 agaactacatttttagtttcataagctggaaataaagatcaattatcaatggtttagata 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 306 agaactacatttttagtttcataatctggaaataaagatcaattatcaatggtttagata 247

                                                         
Query: 541 gagaaatgcagacttccctcatagagtaactctagtttctgactat 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagaaatgcagacttccctcatagagtaactctagtttctgactat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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