BAC Information

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BAC

Clone NameMSMg01-504I21
Chromosome6 (Build37)
Map Location 128,760,607 - 128,761,075
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862
Downstream geneKlrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504I21.T7 (MSMg01no504_i21.b1)MSMg01-504I21.TJ (MSMg01no504_i21.g1)
ACCAG579406AG579407
length761778
length of high quality
(start - end)		687 (47 - 733)473 (77 - 549)
definitionCHROMAT_FILE: MSMg01no504_i21.b1 PHD_FILE: MSMg01no504_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:11 2005CHROMAT_FILE: MSMg01no504_i21.g1 PHD_FILE: MSMg01no504_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:11 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTCTTTTGCTCTGTACCCCATTTTTCCATCAAGTTATTTGATC
TTTGGGGTCTAATTTTATGTATTCTTTGCATATCTTAGATATTAGCCCTC
TATCAGATGTAGGGTTAATAAAGATCTTTTCCCAATCTGTAGCTTGTCGT
TTTGTCCTGTAGACAGTGTCCTTTGCTTTACAGAAGCTTTTCAGTTTCAT
GAGGTCCCATTTACCAATGGCCAATCTTAGAGCCTCAGCCATTCGTGTTC
TATTCAGGAAATTTTCACTGTACCAATGTGTTCCAGGCTATTTCCCACTT
TCTCTTCTAAAAGAGATTAGATTTAGTGTACCTCATTATTATGTGGAGGT
CCTTGATCCACTTGGACTTCAGCTTTGTACAAGGAGATAAAAATAGATCA
ATTTGCATTCTTCTACATACAGACCGCCAGTTAAACCAGCACCATTTCTT
AAAAATGCTTTCTTTTTTCCATTGTATGGTTTGGGCTTCTTTGTCGAAGA
TCAGGTGACCATAGATGTGTGGGTTTATTTCTGGGTCTTCAATTTTTTTT
TCTTACCAAGGCTTATTTATTTCTGGGCATCAGATTCTTTCTGTTCATGC
TAAGCACATGACCTATATTTTTTTAAAAAAAAATGTTTTTGTTTGCTATA
TGATCGCATAGTTTCCAGAATCACACTTTTAAAAAATAATTTTCACCTTT
ACTAAAGTTGG

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGCCTGTGGATAACAGACAG
GGAAAAGAGGAAGTGGGCACAGTTTAGGGACTCAGGGGAAGACCATTGGG
AAGGCCCTTGCTGCTGCTGGATTATTTAGATTTATTATGAGGACAGTTTC
TAACTCATAGGGAGAGGCAGTGCCCTGTCATGCCTGTCCAGCATCAGTTC
ATTAATTAATTAATTAATGTTGGTTTTTCGAGATAGGATTTCTCTGTGTA
GCCCTGGCTGTCCTGGAATTCACTTTGTAGACCAGGCTGGCCTCGAACTC
AGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGC
CACTTGTAACATATGTACCTGAAAGGAGGAAGGTCTTTTGTTGGTTTTTG
CTATAACTTCTAACTGATTATATTCCCTTATCTCTTTCCTGTCCCATCCT
CCATCCTTGAAAATTTAAACTAAAACATTTCAATTTTTTTTTTTTAATCA
GGCCATAGGGCTAGAGTGGGATTGCTGGATGGCAAGTAGATGTCCCTTGC
TGATTTTCAGAACGGCCATGTCAGCCTTCATTCCTACCCGGGTGGCACTT
TATCTTTCCTCCATATCCTCATGACCATTCAACTCTCGTTTTGTTTTTAA
TGATGGGAAACCACACTTGGGATGTAGCTTAAAGGTGCCGTTAGTTGTAT
CGATAAACACTGAGTCTGTCAGGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_i21.g1 MSMg01no504_i21.g1 CHROMAT_FILE:
MSMg01no504_i21.g1 PHD_FILE: MSMg01no504_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:11 2005
         (473 letters)



>mm_chr6_128760407_128761279
          Length = 873

 Score =  899 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgcctgtggataacagacagggaaaagaggaagtgggcacagtttagggactcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgcctgtggataacagacagggaaaagaggaagtgggcacagtttagggactcagg 260

                                                                       
Query: 61  ggaagaccattgggaaggcccttgctgctgctggattatttagatttattatgaggacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagaccattgggaaggcccttgctgctgctggattatttagatttattatgaggacag 320

                                                                       
Query: 121 tttctaactcatagggagaggcagtgccctgtcatgcctgtccagcatcagttcattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctaactcatagggagaggcagtgccctgtcatgcctgtccagcatcagttcattaat 380

                                                                       
Query: 181 taattaattaatgttggtttttcgagataggatttctctgtgtagccctggctgtcctgg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 taattaattaatgttggtttttcgagacaggatttctctgtgtagccctggctgtcctgg 440

                                                                       
Query: 241 aattcactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcctg 500

                                                                       
Query: 301 agtgctgggattaaaggcgtgcgccacttgtaacatatgtacctgaaaggaggaaggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgctgggattaaaggcgtgcgccacttgtaacatatgtacctgaaaggaggaaggtct 560

                                                                       
Query: 361 tttgttggtttttgctataacttctaactgattatattcccttatctctttcctgtccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgttggtttttgctataacttctaactgattatattcccttatctctttcctgtccca 620

                                                            
Query: 421 tcctccatccttgaaaatttaaactaaaacatttcaatttttttttttt 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctccatccttgaaaatttaaactaaaacatttcaatttttttttttt 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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