BAC Information

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BAC

Clone NameMSMg01-505C11
Chromosome6 (Build37)
Map Location 128,136,553 - 128,265,352
singlet/doubletdoublet
Overlap geneLOC100043853, LOC667560, Tead4, LOC652986
Upstream geneEG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9
Downstream geneTulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505C11.T7 (MSMg01no505_c11.b1)MSMg01-505C11.TJ (MSMg01no505_c11.g1)
ACCAG579861AG579862
length752754
length of high quality
(start - end)
678 (49 - 726)368 (326 - 693)
definitionCHROMAT_FILE: MSMg01no505_c11.b1 PHD_FILE: MSMg01no505_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:59 2005CHROMAT_FILE: MSMg01no505_c11.g1 PHD_FILE: MSMg01no505_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:59 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(128,136,553 - 128,137,208)(128,265,029 - 128,265,352)
sequence
NNAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGCTTTCCGCGAAAGGATAAACTAATGTCTAGAGTCCAAGT
ACACCTAGACTATGAACCTTAAAACTATTCTAGGAAGATTAGCTTCATCA
AGACTGTGTGACATGGAGGTCTACACGATGAGAAGTTCTGCAACCCAAAG
AATATTAGACCAGCTTCCCAAAACCAATGTTAAATCCTGGCATACCTGTC
TAGAGGGTTCCACAAGATTGAAAACATTCTTCATCCAGTCAGATGACTGC
GTCTAAACTTAGCACTAAGCACCTCAAAGCTCTCTTTGGCCTCCTACTTC
CTCCAAATTACAACTAGAAAATGGACTCACAAAATATGTTTTTGACACTT
GTATAACTTCTGACCAAAACTTGCTGTAGGATATTTATAGAACAAATAAC
TTCATTTGTGAGAAAGTTATCAGCTAAATGTGGCCCTAGGAAAAATGCCT
CACATATATGTCTTGCTTCCAAATGAATGATTCCTGTATGGTAGATTGGA
AAGTGAGGCAAACACTGGTTTTGACGACCAGAGCATTGGCTGGTGAAGAA
ACCTGTCCAGGGTGGGAGAAACATGGGCTCTGCCGTAACCCTCATGGACT
ACTATAATGCCAGTCAGCCTATCTGGAAGGCCTTTTAACCCTGAGCAATA
CTGACTCCAATTATTCTAAAGATGCAGACAATCAAATGAGACAGCCACCT
GA
GGACCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACTCGAGGAATTCATGCTGTTAAAGGTGAGGGCTGGA
GCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG
CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCA
GGATAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAATTGTGAGGGCTGG
TTAGATGGCTCAGCAGGTAAGGGGGCTTGCGGCCAAGCCTAACACCCCAA
GTCTGATCCCTGGGCCTTTTCCCTTCAGTTGTCCTCTGATGGCCATTGGC
ACAAAAGAAAACAAAATGGTAAATTGTTAACTGTTGCCTGGTTTTCCTTT
TGGATTATTTTACATTATGCTAAACCGGGTATGTTAGGTATTAAGAAAGT
GTCTTGGTCACCTTTTCTGTTGCACCAATAAAATGCCCAGATAAAGCCAT
TTAACGGGAAAGGATCTACTTTGGCTTTCAGTTTGGGGTACTGATCACCA
TGGTGAGGAGTCTTGGAGTCAGGAGCCATGGAAGCTGGTCCCACCTCATC
TGCAAAGCTTAGCTATCAACATCCCAGTTAGGGCGTGCCCCACCCCACCC
ACTCTCCATAATTCTTCCCAGACACGCCTAGAGGCTGACCCACTCCAGAT
GATCCCTGGCAGGCATGGCTAGTGGCTCATCTCTTTGGTGACTCTAGTAA
ACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_c11.b1 MSMg01no505_c11.b1 CHROMAT_FILE:
MSMg01no505_c11.b1 PHD_FILE: MSMg01no505_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
         (678 letters)



>mm_chr6_128136331_128137408
          Length = 1078

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 23  aaaggataaactaatgtctagagtccaagtacacctagactatgaaccttaaaactattc 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aaaggataaactaatgtctagagtccaagtacacctagactatgaaccttaaaactattc 282

                                                                       
Query: 83  taggaagattagcttcatcaagactgtgtgacatggaggtctacacgatgagaagttctg 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taggaagattagcttcatcaagactgtgtgacatggaggtctacacgatgagaagttctg 342

                                                                       
Query: 143 caacccaaagaatattagaccagcttcccaaaaccaatgttaaatcctggcatacctgtc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caacccaaagaatattagaccagcttcccaaaaccaatgttaaatcctggcatacctgtc 402

                                                                       
Query: 203 tagagggttccacaagattgaaaacattcttcatccagtcagatgactgcgtctaaactt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tagagggttccacaagattgaaaacattcttcatccagtcagatgactgcgtctaaactt 462

                                                                       
Query: 263 agcactaagcacctcaaagctctctttggcctcctacttcctccaaattacaactagaaa 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agcactaagcacctcaaagctctctttggcctcctacttcctccaaattacaactagaaa 522

                                                                       
Query: 323 atggactcacaaaatatgtttttgacacttgtataacttctgaccaaaacttgctgtagg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atggactcacaaaatatgtttttgacacttgtataacttctgaccaaaacttgctgtagg 582

                                                                       
Query: 383 atatttatagaacaaataacttcatttgtgagaaagttatcagctaaatgtggccctagg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atatttatagaacaaataacttcatttgtgagaaagttatcagctaaatgtggccctagg 642

                                                                       
Query: 443 aaaaatgcctcacatatatgtcttgcttccaaatgaatgattcctgtatggtagattgga 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaaaatgcctcacatatatgtcttgcttccaaatgaatgattcctgtatggtagattgga 702

                                                                       
Query: 503 aagtgaggcaaacactggttttgacgaccagagcattggctggtgaagaaacctgtccag 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 703 aagtgaggcaaacactggttttgacgaccagagcattggctggtgaagaaacctggccag 762

                                                                       
Query: 563 ggtgggagaaacatgggctctgccgtaaccctcatggactactataatgccagtcagcct 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ggtgggagaaacatgggctctgccgtaaccctcatggactactataatgccagtcagcct 822

                                                                   
Query: 623 atctggaaggccttttaaccctgagcaatactgactccaattattctaaagatgca 678
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 atctggaaggccttttaaccctgagcaatactgactccaattattctaaagatgca 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no505_c11.g1 MSMg01no505_c11.g1 CHROMAT_FILE:
MSMg01no505_c11.g1 PHD_FILE: MSMg01no505_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:59 2005
         (368 letters)



>mm_chr6_128265029_128265796
          Length = 768

 Score =  603 bits (312), Expect = e-177
 Identities = 321/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gttgtcctctgatggccattggcacaaaagaaaacaaaatggtaaattgttaactgttgc 62
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgtcctctgatggccatcggcacaaaagaaaacaaaatggtaaattgttaactgttgc 265

                                                                       
Query: 63  ctggttttccttttggattattttacattatgctaaaccgggtatgttaggtattaagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggttttccttttggattattttacattatgctaaaccgggtatgttaggtattaagaa 205

                                                                       
Query: 123 agtgtcttggtcaccttttctgttgcaccaataaaatgcccagataaagccatttaacgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agtgtcttggtcaccttttctgttgcaccaataaaatgcccagataaagccatttaacgg 145

                                                                       
Query: 183 gaaaggatctactttggctttcagtttggggtactgatcaccatggtgaggagtcttgga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gaaaggatctactttggctttcagtttggggtactgatcaccatggtgaggagtcttgga 85

                                                                       
Query: 243 gtcaggagccatggaagctggtcccacctcatctgcaaagcttagctatcaacatcccag 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 84  gtcaggagccatggaagctggtcccacctcatctgcagagcttagctattaacatcccag 25

                                   
Query: 303 ttagggcgtgccccaccccaccca 326
           ||||||||||||||||||||||||
Sbjct: 24  ttagggcgtgccccaccccaccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)