Query= MSMg01no505_c23.b1 MSMg01no505_c23.b1 CHROMAT_FILE:
MSMg01no505_c23.b1 PHD_FILE: MSMg01no505_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:02 2005
(254 letters)
>mm_chr6_51975345_51975993
Length = 649
Score = 427 bits (221), Expect = e-124
Identities = 238/247 (96%), Gaps = 7/247 (2%)
Strand = Plus / Plus
Query: 1 gtgtgtgtgtgtgcatgccatgagacactgtcataa-gacaactgtcagcttctctcttc 59
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gtgtgtgtgtgtgcatgctatgagacactgtcataaagacaactgtcagcttctctcttc 260
Query: 60 tttctttgagttctagaattgaatgcaggctgtcaagattacatggcaagcatttctgat 119
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tttctttgagttctagaattgaatgcaggctgtcaagattacacggcaagcatttctgat 320
Query: 120 gaatcatcttgcctgcctttataatgcctatttttgtttattttgtgctctttctctttc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcatcttgcctgcctttataatgcctatttttgtttattttgtgctctttctct--- 377
Query: 180 tctccctccctcttccccaccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ---ccctccctcttccccaccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 434
Query: 240 tgtgtgt 246
|||||||
Sbjct: 435 tgtgtgt 441
Score = 83.9 bits (43), Expect = 9e-21
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 203 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 249
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gtgtg-gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 213
Score = 83.9 bits (43), Expect = 9e-21
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 205 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 251
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gtgtg-gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 213
Score = 72.3 bits (37), Expect = 3e-17
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 213 gtgtg-tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 252
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 168 gtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 10
Length of query: 254
Length of database: 649
Length adjustment: 9
Effective length of query: 245
Effective length of database: 640
Effective search space: 156800
Effective search space used: 156800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no505_c23.g1 MSMg01no505_c23.g1 CHROMAT_FILE:
MSMg01no505_c23.g1 PHD_FILE: MSMg01no505_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:02 2005
(442 letters)
>mm_chr6_52138611_52139454
Length = 844
Score = 644 bits (333), Expect = 0.0
Identities = 358/373 (95%), Gaps = 12/373 (3%)
Strand = Plus / Minus
Query: 1 actgttggaaggaagccagactaatctgggccactttcctcaaatgctctgtggtgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actgttggaaggaagccagactaatctgggccactttcctcaaatgctctgtggtgttac 304
Query: 61 tgtgcactcccagagagccagatctttgaaaacatgaaaactcatctctcaatctctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgtgcactcccagagagccagatctttgaaaacatgaaaactcatctctcaatctctgta 244
Query: 121 actctag--tttgtgcaatggttgaaatttgatgctcaggcattacacacacacacacac 178
||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 243 actctagtatttgtgcaatggttgaaatttgatgctcaggcat----------cacacac 194
Query: 179 acacacacacacacacacacacacacacacacacacactgaatatgtacctggccttgaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acacacacacacacacacacacacacacacacacacactgaatatgtacctggccttgaa 134
Query: 239 acagagcagtttgggggattttatagtaaatgagagagagagagagagagagagagagag 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 133 acagagcagtttgggggattttatagtaaatgtgagagagagagagagagagagagagag 74
Query: 299 agagagagagagagagagagagagagagagagagaatgtttttctaactctgtaatgtta 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 73 agagagagagagagagagagagagagagagagagaatgtttatctaactctgtaatgtta 14
Query: 359 taagagatttaaa 371
||||||||||||
Sbjct: 13 gaagagatttaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 58
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 844
Length adjustment: 10
Effective length of query: 432
Effective length of database: 834
Effective search space: 360288
Effective search space used: 360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
