Query= MSMg01no505_e05.b1 MSMg01no505_e05.b1 CHROMAT_FILE:
MSMg01no505_e05.b1 PHD_FILE: MSMg01no505_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:08 2005
(678 letters)
>mm_chr6_100451888_100452965
Length = 1078
Score = 1208 bits (625), Expect = 0.0
Identities = 649/659 (98%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 1 tgtgccatgctcgcacacatgaacacgggaacacacacacacacacacacacacacacac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtgtcatgctcgcacacatgaacacgggaacacacacacacacacacacacacacacac 256
Query: 61 ac----gcaccctgtatgcttccacttgagaagtaaattacagacaacatatctgtcata 116
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acacacgcaccctgtatgcttccacttgagaagtaaattacagacaacatatctgtcata 316
Query: 117 atagccagcatttactgagctctcctgatgcatctggtacctcgctgagtgaccaaaata 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 atagccagcatttactgagctctcctgatgcatctggtacttcgctgagtgaccaaaata 376
Query: 177 gcaaagttacctcactccatcctgcaggaagaaactgaggccccaggaaaggcctttgag 236
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcaaagttacctcactccatcctacaggaagaaactgaggccccaggaaaggcctttgag 436
Query: 237 gaagttgagcctgccctggagttgcggctgcctagcgaactctccattttaaccactgca 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 437 gaagttgagcctgccctggagttgcagctgcctagcgaactctccattttaaccactgca 496
Query: 297 gccgctgcttgcctgtcagtctgtggagacctcctgggaagtcctcagtcatcagcattg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gccgctgcttgcctgtcagtctgtggagacctcctgggaagtcctcagtcatcagcattg 556
Query: 357 accatttctcactcctgcctcaaaacttggaacgataaataaaatcctgttctttgggaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 accatttctcactcctgcctcaaaacttggaacgataaataaaatcctgttctttgggaa 616
Query: 417 ggatttcacagcacgacttctgaggataattgattccgaagcagccttgggaatgcctct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 617 ggatttcacagcacgacttctgaggataattgattccgaagcagccttgggaacgcctct 676
Query: 477 gtgagacaacaggggttctatctggaaacaggcagagcagtggctgagagtctgccatgc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgagacaacaggggttctatctggaaacaggcagagcagtggctgagagtctgccatgc 736
Query: 537 ccacaggggacccacactagagtggcccctgcttcctatggggcctgccaatggaaatcc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccacaggggacccacactagagtggcccctgcttcctatggggcctgccaatggaaatcc 796
Query: 597 ctcttctcacttctgacccgtgaccctgtttaaagctaagtaggtcatcacacacacac 655
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctcttctcacttctgacccgtgtccctgtttaaagctaagtaggtcatcacacacacac 855
Score = 64.5 bits (33), Expect = 3e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 645 cacacacacacacacacacacacacacacacac 677
|||||||||||||||||||||||||||||||||
Sbjct: 228 cacacacacacacacacacacacacacacacac 260
Score = 64.5 bits (33), Expect = 3e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 645 cacacacacacacacacacacacacacacacac 677
|||||||||||||||||||||||||||||||||
Sbjct: 230 cacacacacacacacacacacacacacacacac 262
Score = 62.6 bits (32), Expect = 1e-13
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 646 acacacacacacacacacacacacacacacac 677
||||||||||||||||||||||||||||||||
Sbjct: 227 acacacacacacacacacacacacacacacac 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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