BAC Information

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BAC

Clone NameMSMg01-505F09
Chromosome6 (Build37)
Map Location 91,695,741 - 91,871,000
singlet/doubletdoublet
Overlap geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik
Upstream geneLOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Downstream geneFgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505F09.T7 (MSMg01no505_f09.b1)MSMg01-505F09.TJ (MSMg01no505_f09.g1)
ACCAG580000AG580001
length753752
length of high quality
(start - end)
682 (72 - 753)656 (81 - 736)
definitionCHROMAT_FILE: MSMg01no505_f09.b1 PHD_FILE: MSMg01no505_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:13 2005CHROMAT_FILE: MSMg01no505_f09.g1 PHD_FILE: MSMg01no505_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,695,741 - 91,696,422)(91,870,442 - 91,871,000)
sequence
NNNNNGTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGTTCCTATGAGATTCATGGGGGCTTATGTTTCCCTT
TCTCTGAGGTGAGTGTCTTTTGGTGGGAGATTTTTGAAACTCCAGGAGGG
AGACTGTGGTACGTGTGCTGGGCAGGTGGTCATGGGCTCAGGCCAGCTAG
AGAGACTGGGAAGGCAGAGACTCCTGTGTGGTGTGGGTTTTGAGTCCAGC
TACCTTGGGAAAAGTTCATCAAATTGAAGTAGGCTGTGAGATCAGGTCTG
GAGACTGAGACTCCAAGACTCCTCATCGCCCTTCCTAAGGGCATGGCCTA
CCTCCAGTGGCCCTGACAGGATGGGTCCCTGGGGACTTAGAACCAATGGA
GGTGAATGAGTCCAGAGAGGGGCGGCAGCTAGCAAGGTCAGGAGCACAGT
GTAAATCTTGGCAGCCAAGGGGGTCAGATAAACAGCGAAGACAGTGAAAA
CCTCTCCAAACCAGAAAAACAGATCCTTGTGGCGTTGGTGATGGGCAGAC
GCTGTTGTAAACAAGCAAGGGTTCTGTTAATGATTCTTGCTTGGCCCTGG
GAGCAGACCCCATGCAGGGCCTTTTAGTGGCTTTTAGAACATCTTCCAGG
CTCAGAGGGGAAGAAGAAAACAAAAACACAAGTTAATAAGTGGCTAAGCG
TGAAACATCCTCCAGCGCTCCAAACAGGGCTTACAGGCTCACAAGTGGCT
GGG
TTTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCTCCGCAGGAATCCAGCTGATTCCTGTGAAG
AACGCTAAACTGAGCACAGCTGGTTCTGAGGGCTGCACCAGGAGGTCGAA
ATCAGCGATGGCCTGAAACAGGCCACCACAAAGACGAGCTCTTTTTTTTT
TATCTGAGCTCTGTGTGCAAAAACAGAGTTGGTGGCTAAAGCCAGCACTC
TACAGAAACCAGGTGGTGAAGAAAAGCTCTCCAAACATTTCACTCAGGAG
GGCTTCAACAGCTAAGGTGGATTTTATTCTTTGGACACAGTGATGCAGAA
CTTCTTTAAGATTGTGTGGTCCAACTCATTCAGCATGTAGCCAAGAGAAG
CAAGGAAGGTAGATTGAGGAGGAACGTGTGCAGGGTCACTGTGCTGGCTG
CTGTGGACTGTCAGTGACAGTTACGGTCATGCAGGAGACAAGCCACTGGG
AGTGTCTGTGGTGAGATTTCCTCCCAGAGAGGTTTCACTGAGGTGGAAAG
GCCCATCCTGAATGCAGACAATACCATTCCGTGGGCCAGGGTTCCAGACT
GGATAAAAGGGAGGACGCAAGCAGAACACCGGGGCTTGTCGCTAGCTGTT
TTCCGGCTGTGGCTCATGTGAACAACTACTTCACACATCTGCCACCAGGC
CTGACATGCAGTACCTTCATACTGAGAGCCAAAATAAACCCTTTCTTCCC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_f09.b1 MSMg01no505_f09.b1 CHROMAT_FILE:
MSMg01no505_f09.b1 PHD_FILE: MSMg01no505_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:13 2005
         (682 letters)



>mm_chr6_91695541_91696622
          Length = 1082

 Score = 1265 bits (654), Expect = 0.0
 Identities = 675/682 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagattcatgggggcttatgtttccctttctctgaggtgagtgtcttttggtgggagat 60
           ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgagattcatgggagcttgtgtgtccctttctctgaggtgagtgtcttttggtgggatat 260

                                                                       
Query: 61  ttttgaaactccaggagggagactgtggtacgtgtgctgggcaggtggtcatgggctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgaaactccaggagggagactgtggtacgtgtgctgggcaggtggtcatgggctcag 320

                                                                       
Query: 121 gccagctagagagactgggaaggcagagactcctgtgtggtgtgggttttgagtccagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagctagagagactgggaaggcagagactcctgtgtggtgtgggttttgagtccagct 380

                                                                       
Query: 181 accttgggaaaagttcatcaaattgaagtaggctgtgagatcaggtctggagactgagac 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttgggaaaagttcttcaaattgaagtaggctgtgagatcaggtctggagactgagac 440

                                                                       
Query: 241 tccaagactcctcatcgcccttcctaagggcatggcctacctccagtggccctgacagga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaagactcctcatcacccttcctaagggcatggcctacctccagtggccctgacagga 500

                                                                       
Query: 301 tgggtccctggggacttagaaccaatggaggtgaatgagtccagagaggggcggcagcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtccctggggacttagaaccaatggaggtgaatgagtccagagaggggcggcagcta 560

                                                                       
Query: 361 gcaaggtcaggagcacagtgtaaatcttggcagccaagggggtcagataaacagcgaaga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gcaaggtcaggagcacagtgtaaatcttggcagccaagggggtcagataaacagagaaga 620

                                                                       
Query: 421 cagtgaaaacctctccaaaccagaaaaacagatccttgtggcgttggtgatgggcagacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgaaaacctctccaaaccagaaaaacagatccttgtggcgttggtgatgggcagacg 680

                                                                       
Query: 481 ctgttgtaaacaagcaagggttctgttaatgattcttgcttggccctgggagcagacccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgttgtaaacaagcaagggttctgttaatgattcttgcttggccctgggagcagacccc 740

                                                                       
Query: 541 atgcagggccttttagtggcttttagaacatcttccaggctcagaggggaagaagaaaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgcagggccttttagtggcttttagaacatcttccaggctcagaggggaagaagaaaac 800

                                                                       
Query: 601 aaaaacacaagttaataagtggctaagcgtgaaacatcctccagcgctccaaacagggct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaacacaagttaataagtggctaagcgtgaaacatcctccagcgctccaaacagggct 860

                                 
Query: 661 tacaggctcacaagtggctggg 682
           ||||||||||||||||||||||
Sbjct: 861 tacaggctcacaagtggctggg 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no505_f09.g1 MSMg01no505_f09.g1 CHROMAT_FILE:
MSMg01no505_f09.g1 PHD_FILE: MSMg01no505_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:13 2005
         (656 letters)



>mm_chr6_91870442_91871497
          Length = 1056

 Score = 1042 bits (539), Expect = 0.0
 Identities = 554/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagctgattcctgtgaagaacgctaaactgagcacagctggttctgagggctgcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tccagctgattcctgtgaagaacgctaaactgagcacagctggttctgagggctgcacca 500

                                                                       
Query: 61  ggaggtcgaaatcagcgatggcctgaaacaggccaccacaaagacgagctcttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaggtcgaaatcagcgatggcctgaaacaggccaccacaaagacgagctcttttttttt 440

                                                                       
Query: 121 tatctgagctctgtgtgcaaaaacagagttggtggctaaagccagcactctacagaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatctgagctctgtgtgcaaaaacagagttggtggctaaagccagcactctacagaaacc 380

                                                                       
Query: 181 aggtggtgaagaaaagctctccaaacatttcactcaggagggcttcaacagctaaggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggtggtgaagaaaagctctccaaacatttcactcaggagggcttcaacagctaaggtgg 320

                                                                       
Query: 241 attttattctttggacacagtgatgcagaacttctttaagattgtgtggtccaactcatt 300
           |  |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 319 accttagcctttggacacagtgatgcagaacttctttaagattgcgtggtccaactcatt 260

                                                                       
Query: 301 cagcatgtagccaagagaagcaaggaaggtagattgaggaggaacgtgtgcagggtcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagcatgtagccaagagaagcaaggaaggtagattgaggaggaacgtgtgcagggtcact 200

                                                                       
Query: 361 gtgctggctgctgtggactgtcagtgacagttacggtcatgcaggagacaagccactggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gtgctggctgctgtggactgtcagtgacagttacggtcatgcaggagacaagccactggg 140

                                                                       
Query: 421 agtgtctgtggtgagatttcctcccagagaggtttcactgaggtggaaaggcccatcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agtgtctgtggtgagatttcctcccagagaggtttcactgaggtggaaaggcccatcctg 80

                                                                       
Query: 481 aatgcagacaataccattccgtgggccagggttccagactggataaaagggaggacgcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  aatgcagacaataccattccgtgggccagggttccagactggataaaagggaggacgcaa 20

                              
Query: 541 gcagaacaccggggcttgt 559
           |||||||||||||||||||
Sbjct: 19  gcagaacaccggggcttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)