BAC Information

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BAC

Clone NameMSMg01-506E09
Chromosome6 (Build37)
Map Location 106,254,150 - 106,328,217
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506E09.T7 (MSMg01no506_e09.b1)MSMg01-506E09.TJ (MSMg01no506_e09.g1)
ACCAG580708AG580709
length744794
length of high quality
(start - end)
234 (91 - 324)371 (83 - 453)
definitionCHROMAT_FILE: MSMg01no506_e09.b1 PHD_FILE: MSMg01no506_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:25 2005CHROMAT_FILE: MSMg01no506_e09.g1 PHD_FILE: MSMg01no506_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,327,984 - 106,328,217)(106,254,150 - 106,254,520)
sequence
NATGTAACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGAGA
GCGCGGAATTCAAAGGCTTTGCACATAGAAAATGTTTGNTCATCTCTAAG
TGTCTCTCTTTGACTGTTTATCTACATTATAGTCACTTAAAATTTTTAAT
TGAAAATGAAAATGTTATCTAGCTTTGCCATTTGGTTGTAAAACAGCAAC
TGATATATACTCACTGCTAGTTGATATTATTTTAAAATCTTTCTTGAAAT
ACATTTAAAACTATGCATGGAAAAAGAAATCTACTTAGTATAAGAATCTT
TTATTGAGCACGTGCTGTCTATGATTTTTTTTTTAGCTGTTAGGCTCTCA
GGAAAAGGGCACCATAGTTGCTTTCTGCAAGGAACTTCCAGCTGAGATCA
CTTCTTTTCACTCTCAGATTCCAGCCAAAAAGCAATCAAGAAATGGAAAT
AGAATCAGAAGCTGAGATTTTGGTATGCACCTCTCAAGGAGTAAGACAGA
TACCTCCAATGGGCCACTGGAGTATTGTGGCATTCTATTGTATGCTAATG
AGTCAACAAAGGGAAAAATAACGCAGTAGAGAACAATTTCATATATTCCC
CCCTTCAGATATATGATGGATCTATTCCATCCACCAATAACTTGATACTA
GTCAGTATGAATATTGACCCTTGTCTATGAAGTGCGTCTACACCCCTTTG
ATTAACCTACTATTGAGAGTATTGGCAAAGCTTCTCTTGGATGA
CTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATGAAAGAGGCCACA
GTTCTGACTTTCTATATCTAGCACTCTGAGGGACTCAAGAGAGTGGACCA
GCAAGATGGTTCAATGGGTAAAGGCACTTGCCTGGCCACCTGAGTGAAAT
CCCTAAAATTCACATTCAGTTGGGAAAACAAAACTAACTTCAGAAACTTT
TCTTCTGACATTCTTATGTGTACTAGGAGAAGTGTACATCCCAACAATAA
TAATGAAAAATTTAAATAACACAGAGAGGCACATGGCTAGCCCAAGGTCA
CACTCCTTAGCAGTACTAGGGTAAACTTGGAAGATATCAGCCTTGTTCTT
TGTAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTG
TGTGATGATTCCTTTTCCTTTTCTATAATCTGGATTACATTATCGTGATT
TCCTTTATCCCTTTTTTTTTCCCTTTTTCCCCCTACTTTTTTTTTATTTC
CCCTTTTTTCCTTTTTTTCTTTATCTGCTTTATCCTCCTCTTTTTCTTCT
TACCATTTTTCGCTCCCTTTTTCCCCTTTTCTACTTCTCTACCTTCCTAT
TCTGTATTTTCCTATTATTTCCGTCTTTCCTTTTTCGCTTTCTCCTTTTT
TTTGTTAATATTTGTTCTATATATCACTGTCTCCCTACTATTTTTTCTTT
CCCCCCCTTATCTCCCCTCCCTTTTCTTTTCTCTATCTTAGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_e09.b1 MSMg01no506_e09.b1 CHROMAT_FILE:
MSMg01no506_e09.b1 PHD_FILE: MSMg01no506_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:25 2005
         (234 letters)



>mm_chr6_106327784_106328417
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctctaagtgtctctctttgactgtttatctacattatagtcacttaaaatttttaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 434 catctctaagtgtctctctttgactgtttatctacattatagtcacttaaaaattttaat 375

                                                                       
Query: 61  tgaaaatgaaaatgttatctagctttgccatttggttgtaaaacagcaactgatatatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgaaaatgaaaatgttatctagctttgccatttggttgtaaaacagcaactgatatatac 315

                                                                       
Query: 121 tcactgctagttgatattattttaaaatctttcttgaaatacatttaaaactatgcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcactgctagttgatattattttaaaatctttcttgaaatacatttaaaactatgcatgg 255

                                                                 
Query: 181 aaaaagaaatctacttagtataagaatcttttattgagcacgtgctgtctatga 234
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaaagaagtctacttagtataagaatcttttattgagcacgtgctgtctatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no506_e09.g1 MSMg01no506_e09.g1 CHROMAT_FILE:
MSMg01no506_e09.g1 PHD_FILE: MSMg01no506_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:25 2005
         (371 letters)



>mm_chr6_106253950_106254720
          Length = 771

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgaaagaggccacagttctgactttctatatctagcactctgagggactcaagaga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctatgaaagaggccacagttctgactttctatatctagcactccgagggactcaagaga 260

                                                                       
Query: 61  gtggaccagcaagatggttcaatgggtaaaggcacttgcctggccacctgagtgaaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaccagcaagatggttcaatgggtaaaggcacttgcctggccacctgagtgaaatcc 320

                                                                       
Query: 121 ctaaaattcacattcagttgggaaaacaaaactaacttcagaaacttttcttctgacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaaattcacattcagttgggaaaacaaaactaacttcagaaacttttcttctgacatt 380

                                                                       
Query: 181 cttatgtgtactaggagaagtgtacatcccaacaataataatgaaaaatttaaataacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttatgtgtactaggagaagtgtacatcccaacaataataatgaaaaatttaaataacac 440

                                                                       
Query: 241 agagaggcacatggctagcccaaggtcacactccttagcagtactagggtaaacttggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaggcacatggctagcccaaggtcacactccttagcagtactagggtaaacttggaa 500

                                                                       
Query: 301 gatatcagccttgttctttgtaaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatcagccttgttctttgtaaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 560

                      
Query: 361 tttgtgtgtgt 371
           | |||||||||
Sbjct: 561 tgtgtgtgtgt 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)