Query= MSMg01no506_g06.b1 MSMg01no506_g06.b1 CHROMAT_FILE:
MSMg01no506_g06.b1 PHD_FILE: MSMg01no506_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:34 2005
(544 letters)
>mm_chr6_91246821_91247764
Length = 944
Score = 986 bits (510), Expect = 0.0
Identities = 533/542 (98%), Gaps = 4/542 (0%)
Strand = Plus / Plus
Query: 5 gaattcattcatttcc--gggcactggtcactgactttaggctgctggatacaccggagt 62
||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 205 gaattcattcatt--cttgggcactggtcactgactttaggctgctggacacaccagagt 262
Query: 63 ccaggcaatgtcctgccttcgtggagtagttgggggatatacagttgatgcatggtgcac 122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaggcaatgtcctgtcttcgtggagtagttgggggatatacagttgatgcatggtgcac 322
Query: 123 ttcacgtctgggctgtggagaaaaacggtggggcagaagatgaagatggtagagtgaggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcacgtctgggctgtggagaaaaacggtggggcagaagatgaagatggtagagtgaggg 382
Query: 183 actgtgttctggaaagcagtcgagaagacctcaccaacggggtgaggaatggaacttggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actgtgttctggaaagcagtcgagaagacctcaccaacggggtgaggaatggaacttggg 442
Query: 243 agctcctgaagggttgtattccgaacagtgggaactgcagaaggaaaggtactcaggtag 302
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 agctcctaaagggttgtattccgaacagtgggaacagcagaaggaaaggtactcaggtag 502
Query: 303 tcttggcatggaagagccaaatggctgagcatcacctcagcagggactgaccaggaaaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttggcatggaagagccaaatggctgagcatcacctcagcagggactgaccaggaaaga 562
Query: 363 aggaggtgatagtgaggagctgacagatcattggggcaccaaagatagccttgaaggttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggaggtgatagtgaggagctgacagatcattggggcaccaaagatagccttgaaggttt 622
Query: 423 gtatcttgctcagagagtggtgggagaagtgatgggatctagttgaagtttctctgacct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtatcttgctcagagagtggtgggagaagtgatgggatctagttgaagtttctctgacct 682
Query: 483 cctagaaaatagattgtaggaataaggtgggggctaggtagacatggagggctgggacga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctagaaaatagattgtaggaataaggtgggggctaggtagacatggagggctgggacga 742
Query: 543 tg 544
||
Sbjct: 743 tg 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_g06.g1 MSMg01no506_g06.g1 CHROMAT_FILE:
MSMg01no506_g06.g1 PHD_FILE: MSMg01no506_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:34 2005
(621 letters)
>mm_chr6_91332291_91333310
Length = 1020
Score = 1135 bits (587), Expect = 0.0
Identities = 612/621 (98%), Gaps = 3/621 (0%)
Strand = Plus / Minus
Query: 1 cagttgggcctttgttctgagctggcagtaaaaaatagcctgggtgtgggaagagcttcc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 691 cagttgggcctttgttctgagctggcagtagaaaatagcctgggtgtgggaagagcttcc 632
Query: 61 tcccagccctgataatgccgcctatttgctgtgtgatcttgacatacagcctatctctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcccagccctgataatgccgcctatttgctgtgtgatcttgacatacagcctatctctga 572
Query: 121 ggctcaatgtccccccacacacaccccaagagggaaggcaccaataatagacctcttgga 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggctcaatgt--ccccacacacaccccaagagggaaggcaccaataatagacctcttgga 514
Query: 181 cccacagtgcatattcattgcctgcaaagtcctagatgccagtcttccactgtggagcat 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cccacagtgcatgttcattgcctgcaaagtcctagatgccagtcttccactgtggagcat 454
Query: 241 ctggattctctgagcatctgctttgacccagtgcatgggtcttagcagcaggggtttcgg 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctgga-tccctgagcatctgctttgacccagtgcatgggtcttagcagcaggggtttcgg 395
Query: 301 acgtaacataaaaaccagcgttgtgttctaagctctaagttgtttcagtggtgatgaggg 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acgtaacataaaagccagcgttgtgttctaagctctaagttgtttcagtggtgatgaggg 335
Query: 361 tgaaacagggtctcactttgtagccctggaggatgtggaactcagatccacctgcttcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgaaacagggtctcactttgtagccctggaggatgtggaactcagatccacctgcttcca 275
Query: 421 tctccaagtgctaggatcaaaggcctcatgcattgctatacctggctagactctatgttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctccaagtgctaggatcaaaggcctcatgcattgctatacctggctagactctatgttc 215
Query: 481 tgctcctcaggctcttgttaggtctgagatacaccttctctgaagccctgtccatacaac 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgctcctcaggctcttgctaggtctgagatacaccttctctgaagccctgtccatacaac 155
Query: 541 atgttggaattatctgagggagaaggggctgtttgaaagcccttgagatttgtaacttct 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 154 atgttggaattatctgagggagaaggagctgtttgaaagcccttgagatttgtaacttct 95
Query: 601 gaacaggggaacgaaccacag 621
|||||||||||||||||||||
Sbjct: 94 gaacaggggaacgaaccacag 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space: 617110
Effective search space used: 617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
