BAC Information

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BAC

Clone NameMSMg01-506L07
Chromosome6 (Build37)
Map Location 56,711,120 - 56,871,655
singlet/doubletdoublet
Overlap gene5830411G16Rik, Kbtbd2, Fkbp9, Nt5c3, LOC100042327
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, LOC100042288
Downstream geneV1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506L07.T7 (MSMg01no506_l07.b1)MSMg01-506L07.TJ (MSMg01no506_l07.g1)
ACCAG581035AG581036
length752759
length of high quality
(start - end)		677 (76 - 752)630 (80 - 709)
definitionCHROMAT_FILE: MSMg01no506_l07.b1 PHD_FILE: MSMg01no506_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:00 2005CHROMAT_FILE: MSMg01no506_l07.g1 PHD_FILE: MSMg01no506_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,711,120 - 56,711,796)(56,871,098 - 56,871,655)
sequence
TTCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTTCCTTTCCTTCCAACATTCCACAAAACTTTTTTTTA
GAGAAAAAAGGATCTTGTTTTTATTTTTTCGTACAAAAAACTTCATAAAA
ATGACTTCCTACCTACATTATGAAGAAGAAACTGGCTGCCTCGTATAGTA
TAACACTCCAAAATGAAAAGATTGTGCATGTCTAAGGGGTTGGATATATT
TTGTAAAACTCTAAATACATTTGTATTTCTGTGCTGTTCAGAAATTTACC
TTTTTACTTATACTAATTAAAGATGCAGAAAACTATATATTTAAATCATG
TATATGGAACGCAATTTAAGGGGTTTCCAATCGTATTTTTCATCAGCTTC
CCATGCACATAGTATGCTGCTGAAGTTTCTTTTTTGTGCAATATAAACAT
TTGAACATTTCAAGTCAGGTACTGAGCCAGAAAAGGTCATTGAAGTTTTC
AGAGAACTGCCTAAAGCGTATTTTATTCTGTTGAGATACTGTTATTTTAT
AGCTGGGAAACCAAGATTGTGCATTACATGTTTCAGTCCACTTGATCATT
TCTTTCTAAATTTAGAAAGCATGTGATTAATGACTTGGTGGAGGTACTTA
ATGATTGGAAAACAGTTTTTAAGGAAGTCAAGCTATAGCTTCTCTTTCCT
CCAGTGGCTTTGTAGTTTGTGCCGGTTCATTTCTGTTGTCATTTGTTTTT
TA

NCCAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTTTTCAGAGGGTAT
ATAAATGTGAAGGCCCAGAGAGGCAGGGTGGGTTGTTGTTAGGTTGTTGT
TGATTGGCTGTTGGTTGCTGTGGGTCGCTGTTTGTTAAATATTTGGCGAG
AAGAAGAAATTAGATATCCTGATGGTGAAGATCAAACTTGCCCCTAGGAA
CTCAACACCCCTAATCAACAGGATGCAGTCTAAGGATAACTTGTCCCCCT
TCTGGCCCCTGACTTCATTCTGGGATCTCTTTCCTTTCCTCTCTATCCTT
TTTTTCTCTCTTATCTGATGTTAGGGAGTAAGGGTAGAAGAAAAAGGATG
GAGAAGGGTGAAAAAGAGAAGAGCCCACAAAGTATCCAGGAATAGCTACA
TCTTTCTGAATCCTGTGTCCATGCCTTGAATTCGCCATCCTTCCTGTGTT
AGGATGGCAGCCATGTGCCACCACAATCAGCTCCAGATTTCTCTTTATCG
CATCTACAGTCTCTTAAGATTACTGATTAATTTGTCATAATCAAACCCTT
TCTCTAAGAGTTTTATTTTAGAACAATATGGATTTACCGTAGTATGAACG
AGTGCTCTCATATATCACACACCAGTTTCCCTTGTCATTAATATCTTGTG
TGACTCATTTGTATTGATACATTATTAAATGCACTGCCACCCTTTTCAGA
TTTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_l07.b1 MSMg01no506_l07.b1 CHROMAT_FILE:
MSMg01no506_l07.b1 PHD_FILE: MSMg01no506_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:00 2005
         (677 letters)



>mm_chr6_56710920_56711996
          Length = 1077

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacattccacaaaacttttttttagagaaaaaaggatcttgtttttattttttcgtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacattccacaaaacttttttttagagaaaaaaggatcttgtttttattttttcgtaca 260

                                                                       
Query: 61  aaaaacttcataaaaatgacttcctacctacattatgaagaagaaactggctgcctcgta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaactccataaaaatgacttcctacctacattatgaagaagaaactggctgcctcgta 320

                                                                       
Query: 121 tagtataacactccaaaatgaaaagattgtgcatgtctaaggggttggatatattttgta 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactataacactccaaaatgaaaagattgtgcatgtctaaggggttggatatattttgta 380

                                                                       
Query: 181 aaactctaaatacatttgtatttctgtgctgttcagaaatttacctttttacttatacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactctaaatacatttgtatttctgtgctgttcagaaatttacctttttacttatacta 440

                                                                       
Query: 241 attaaagatgcagaaaactatatatttaaatcatgtatatggaacgcaatttaaggggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaagatgcagaaaactatatatttaaatcatgtatatggaacgcaatttaaggggtt 500

                                                                       
Query: 301 tccaatcgtatttttcatcagcttcccatgcacatagtatgctgctgaagtttctttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaatcgtatttttcatcagcttcccatgcacatagtatgctgctgaagtttctttttt 560

                                                                       
Query: 361 gtgcaatataaacatttgaacatttcaagtcaggtactgagccagaaaaggtcattgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgcaatataaacatttgaacatttcaagtcaggtactgagccagaaaaggtcattgaag 620

                                                                       
Query: 421 ttttcagagaactgcctaaagcgtattttattctgttgagatactgttattttatagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcagagaactgcctaaagcgtattttattctgttgagatactgttattttatagctg 680

                                                                       
Query: 481 ggaaaccaagattgtgcattacatgtttcagtccacttgatcatttctttctaaatttag 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 ggaaaccaagattgtgcattacatgtttcagtccacttgatcattcctttctaaatttag 740

                                                                       
Query: 541 aaagcatgtgattaatgacttggtggaggtacttaatgattggaaaacagtttttaagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagcatgtgattaatgacttggtggaggtacttaatgattggaaaacagtttttaagga 800

                                                                       
Query: 601 agtcaagctatagcttctctttcctccagtggctttgtagtttgtgccggttcatttctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtcaagctatagcttctctttcctccagtggctttgtagtttgtgccggttcatttctg 860

                            
Query: 661 ttgtcatttgtttttta 677
           |||||||||||||||||
Sbjct: 861 ttgtcatttgtttttta 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_l07.g1 MSMg01no506_l07.g1 CHROMAT_FILE:
MSMg01no506_l07.g1 PHD_FILE: MSMg01no506_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:00 2005
         (630 letters)



>mm_chr6_56870626_56871655
          Length = 1030

 Score = 1079 bits (558), Expect = 0.0
 Identities = 558/558 (100%)
 Strand = Plus / Minus

                                                                        
Query: 73   gattggctgttggttgctgtgggtcgctgtttgttaaatatttggcgagaagaagaaatt 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 gattggctgttggttgctgtgggtcgctgtttgttaaatatttggcgagaagaagaaatt 971

                                                                        
Query: 133  agatatcctgatggtgaagatcaaacttgcccctaggaactcaacacccctaatcaacag 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  agatatcctgatggtgaagatcaaacttgcccctaggaactcaacacccctaatcaacag 911

                                                                        
Query: 193  gatgcagtctaaggataacttgtcccccttctggcccctgacttcattctgggatctctt 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  gatgcagtctaaggataacttgtcccccttctggcccctgacttcattctgggatctctt 851

                                                                        
Query: 253  tcctttcctctctatcctttttttctctcttatctgatgttagggagtaagggtagaaga 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  tcctttcctctctatcctttttttctctcttatctgatgttagggagtaagggtagaaga 791

                                                                        
Query: 313  aaaaggatggagaagggtgaaaaagagaagagcccacaaagtatccaggaatagctacat 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  aaaaggatggagaagggtgaaaaagagaagagcccacaaagtatccaggaatagctacat 731

                                                                        
Query: 373  ctttctgaatcctgtgtccatgccttgaattcgccatccttcctgtgttaggatggcagc 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  ctttctgaatcctgtgtccatgccttgaattcgccatccttcctgtgttaggatggcagc 671

                                                                        
Query: 433  catgtgccaccacaatcagctccagatttctctttatcgcatctacagtctcttaagatt 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  catgtgccaccacaatcagctccagatttctctttatcgcatctacagtctcttaagatt 611

                                                                        
Query: 493  actgattaatttgtcataatcaaaccctttctctaagagttttattttagaacaatatgg 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  actgattaatttgtcataatcaaaccctttctctaagagttttattttagaacaatatgg 551

                                                                        
Query: 553  atttaccgtagtatgaacgagtgctctcatatatcacacaccagtttcccttgtcattaa 612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  atttaccgtagtatgaacgagtgctctcatatatcacacaccagtttcccttgtcattaa 491

                              
Query: 613  tatcttgtgtgactcatt 630
            ||||||||||||||||||
Sbjct: 490  tatcttgtgtgactcatt 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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