Query= MSMg01no506_n24.b1 MSMg01no506_n24.b1 CHROMAT_FILE:
MSMg01no506_n24.b1 PHD_FILE: MSMg01no506_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:13 2005
(632 letters)
>mm_chr6_56872762_56873793
Length = 1032
Score = 1166 bits (603), Expect = 0.0
Identities = 624/633 (98%), Gaps = 4/633 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacttaaaatattagttacaatagaaatagtttctcaactttatattttagttc 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcacttaaaatattagtttcaatagaaatagtttctcaactttatattttagttc 259
Query: 64 tggatgctcacttgtactccagtaagtaagtcacactcac----catgctcaagtcagat 119
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 tggatgctcacttgtactccagtaagtaagtcacactcaccatgcatgctcaagtcagat 319
Query: 120 ggaactacagtaacatcaaaacaaccctaaatgaaacagacattctgggatcaacaaatc 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaacaacagtaacatcaaaacaaccctaaatgaaacagacattctgggatcaacaaatc 379
Query: 180 accttaaaacaaacctcaaatggaattcttgagacaaacaatttaaacgagactgcaatt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gccttaaaacaaacctcaaatggaattcttgagacaaacaatttaaacgagactgcaatt 439
Query: 240 aactcttaaaagtacatttctaggatttaggaaagagttttgggggactgacacatgaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactcttaaaagtacatttctaggatttaggaaagagttttgggggactgacacatgaat 499
Query: 300 acttcttggaacataaaacaaggaagaacattcaaataatcgagctgtttcaatattggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acttcttggaacataaaacaaggaagaacattcaaataatcgagctgtttcaatattggc 559
Query: 360 atttctaaaaaaacactgaaaatgctcttttcataacgtaagccaaggcagccccgatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttctaaaaaaacactgaaaatgctcttttcataacgtaagccaaggcagccccgatga 619
Query: 420 tgtaaaacaaacaaacaaacgaaccaaccaaccaaccaaccaaccgactcctggacaaga 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtaaaacaaacaaacaaaccaaccaaccaaccaaccaaccaaccgactcctggacaaga 679
Query: 480 gactatcggattagctgcacgtcttggaggcggttgccaaccggagattagctctggaga 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 gactatcggattagctgcacgtcttggaggcggttgccaactggagattagctctggaga 739
Query: 540 aacgggttttgcagcaagaggtagttatctccgagcatctattctctccactctttgaaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacgggttttgcagcaagaggtagttatctccgagcatctattctctccactctttgaaa 799
Query: 600 caaacgctgtcaagcatcagcacgcgtgcaggc 632
|||||||||||||||||||||||||||||||||
Sbjct: 800 caaacgctgtcaagcatcagcacgcgtgcaggc 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_n24.g1 MSMg01no506_n24.g1 CHROMAT_FILE:
MSMg01no506_n24.g1 PHD_FILE: MSMg01no506_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:13 2005
(250 letters)
>mm_chr6_56984086_56984735
Length = 650
Score = 458 bits (237), Expect = e-133
Identities = 243/247 (98%), Gaps = 4/247 (1%)
Strand = Plus / Minus
Query: 1 ttatttggaacttagcaaaggtgtaactggaaacatacagatattgagtagaatattata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttatttggaacttagcaaaggtgtaactggaaacatacagatattgagtagaatattata 341
Query: 61 acttcacagttacaacccagttcccttaagaagcagcagcagaagtatcactgtagagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acttcacagttacaacccagttcccttaagaagcagcagcagaagtatcactgtagagac 281
Query: 121 tgtggggaaacaatcatttctgagcttcatcacaagtttatggtgttattttggaaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgtggggaaacaatcatttctgagcttcatcacaagtttatggtgttattttggaaaata 221
Query: 181 tatgagaatgttgactggaaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 220 tatgagaatgttgactggaa----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 165
Query: 241 gtgtgtg 247
|||||||
Sbjct: 164 gtgtgtg 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
