NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCCAGAGAAGATGGCTTTAGTACCAGGAAAAAACAAAACCAAACC
ACCACCACCACTTCCACCGCCACCACTACAACAACAACAACAACAACTTG
CTAGCCAGAGGTAGGGCAAGCAGACAAAGAGAAACAGCTACCATCTTCAA
TGTCCTTTATATATTATAGGCTGCCACTAGAAGCTGTGGCCTAGATTAAA
GGTGGATTTTATCACCTCATAAAATCTAGATTAAAGAAGGGGTTTCCCAC
TTCAAAAGCTATAATTAAGAAAAATCACACATAGTACTGAAACTCTTTCA
GTTTTAGTTAATTCAACATGTTCACATACAGGTTTTCCTACTTTTATAAA
TGATAAGCAAAATCCTCTCCTGAATGTGGTCACAATGTCAAGGCTGAGCT
ATTTAAGGTTATTCTTAGCTCAAAGTCAGTAGAAAGATATGTAAACTATA
AAAATGATATACAGAAATGCCTCTGGAATGTTCACCTTGTATTATAAGAT
CTAAGATGAAAATCCAGTAAATGACAATGTGAGAGTAAATTGCTCAGGAG
ACAATGCTTCCTGTTGATTATGATGTGTGATCTAACAGATAAATGTATCC
ATGCCACAAATTCAGAAAACATTAAGCAAAGTCACCTATCAGAACTGTGG
ACACCTTTCTTAGAGGAACAGCTTTGCTGAGCAATTTTAACTTCACAATA
NGGCTGCTTTAGCCTCTGAGTANGCTGGCTT

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTTATCGCCTGCATCAGAATT
TCAGTTTAGTTATTCATTTTTGTAGGCATAAATATTTTGCAACCTACTTT
TAATAAGGGTCCAATCTCTCTTCTTGCCCACTACCCACCAGAGATAATGG
AAAAGAAAAGTTATTAGGATTTGGGGAAACTGGGTCTGTTCAGCAATAGT
TCTTTGGGGGCGAGCTTCTTTGCCAGCAGTTCAGTCCCGTAGCAAACACC
AAATATGACTCAGCAGCTGCAGATCAGCCCTCTAGGCAGTCAGATACCAC
ACATGAACTGGCAGGTATAGACCAGTCCTTTAGGCAGGCAGACACCAGGC
AGGAACCAGCAACTGTAGTTCGATCCTAAAGAAACTGTCAGGCTCTCCAA
CTGGTCTGAAGTGAGGTCACTGAAGCAGCAAGTTACCACAGGAACCTCAT
AAGCAGTTCTTGGGTGAGTTTCTCTCATGGATGCATTACCACAAGTTGAG
CTCAACAACACTATGTAAGGCAAACCGATACATGTGTGTCGTTAGTGAAG
AATAGCTAGGTGGAGCAAACCAAACCAATGCTCATTGCTTGTCTCCCACT
ATCCATGGGGGTCACATTTATACTCATATGCATCCTTTCATGTGTTTGCT
ACATCAAAACATCCTTTCACCTGTGTCNTCTTTTTCANGAAAACATTCTT
TTATGTGCCTGCTCCAGCAAAATATTCTN

Query= MSMg01no507_a16.b1 MSMg01no507_a16.b1 CHROMAT_FILE:
MSMg01no507_a16.b1 PHD_FILE: MSMg01no507_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:26 2005
         (596 letters)



>mm_chr6_149512668_149513663
          Length = 996

 Score = 1038 bits (537), Expect = 0.0
 Identities = 551/559 (98%), Gaps = 6/559 (1%)
 Strand = Plus / Minus

                                                                       
Query: 38  aaaaaacaaaaccaaaccaccaccaccacttccaccgccaccactacaacaacaacaaca 97
           |||||||||||||||||||||||||||||||||||||||||||||      |||||||||
Sbjct: 996 aaaaaacaaaaccaaaccaccaccaccacttccaccgccaccact------acaacaaca 943

                                                                       
Query: 98  acaacttgctagccagaggtagggcaagcagacaaagagaaacagctaccatcttcaatg 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 acaacttgctagccagaggtagggcaagcagacaaagagaaacagctaccatcttcaatg 883

                                                                       
Query: 158 tcctttatatattataggctgccactagaagctgtggcctagattaaaggtggattttat 217
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 882 tcctttatatattataggctgccaccagaagctgtggcctagattaaaggtggattttat 823

                                                                       
Query: 218 cacctcataaaatctagattaaagaaggggtttcccacttcaaaagctataattaagaaa 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cacctcataaaatctagattaaagaaggggtttcccacttcaaaagctataattaagaaa 763

                                                                       
Query: 278 aatcacacatagtactgaaactctttcagttttagttaattcaacatgttcacatacagg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aatcacacatagtactgaaactctttcagttttagttaattcaacatgttcacatacagg 703

                                                                       
Query: 338 ttttcctacttttataaatgataagcaaaatcctctcctgaatgtggtcacaatgtcaag 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttttcctacttttataaatgataagcaaaatcctctcctgaatgtggtcacaatgtcaag 643

                                                                       
Query: 398 gctgagctatttaaggttattcttagctcaaagtcagtagaaagatatgtaaactataaa 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gctgagctatttaaggttattcttagctcaaagtcagtagaaagatatgtaaactataaa 583

                                                                       
Query: 458 aatgatatacagaaatgcctctggaatgttcaccttgtattataagatctaagatgaaaa 517
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 582 aatgatatacagaaatgcctctggaatgttcaccttatattataagatctaagatgaaaa 523

                                                                       
Query: 518 tccagtaaatgacaatgtgagagtaaattgctcaggagacaatgcttcctgttgattatg 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tccagtaaatgacaatgtgagagtaaattgctcaggagacaatgcttcctgttgattatg 463

                              
Query: 578 atgtgtgatctaacagata 596
           |||||||||||||||||||
Sbjct: 462 atgtgtgatctaacagata 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)