NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATGTATTTCCATGCATGTCTTTGAAAGGCCCTCTGTGGGCC
GGGGGTGAGCTTTAGGGTGCTAAAAGCCAACCTGAGACAGGTACTCTGGA
GTTCTTCTCTGGCCAGTGAGGAATAAAAACGAAAGAATAGAGAAGTGAGC
AAAGCAAAGGGAGATGATTAAGAAAAACTGAGAAAACTCCCGAGCGGACA
GGGACCCAAAGGACAATGAAAATGGATGTACCACCTGCATGGTCCTTTTA
TAGGACTTACAGCAGATACTGGACAAAGATTGAGGGACTTTGTCTATTGA
GATTGCTTAATTTGGGGCATATTGTGGGCCAGGTCAGTGGGTCACCCACG
CACTGAAAAGGTGTCTTCCCGCTGCTTGCCCAGTGGGAGAGTCACACATT
GAAGCCCCACTCTGTCCAACTTTAACCTATTGGTTGGCTGGTGACCTTGG
CTCACCTGCTCACGATGCCAACCTTAGCAAGTGTGGCTGGTCTCTGACCT
TGGCAGGAATCTTGCTGTTCTTTGTTCTCAACGTTTAGCTGGCTGGTTTG
TAGTTTAACTACAGGCCTCTTTTCTTTTCCTGCCTACAGAGAGCTATCTG
CTGCCAGGAACGCATTTAACCCAGCGTGGGCAAATGACTTAAGTGCCCAG
ACAGAGCAGGTGACTGAATGAGGGACAACATCCCTGTCAGCCTTCC

NNNNNCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGACAAGACAGACCAT
TAGCACCGGGGTTGCGAAGGCAGTCTGTCTTAGCCAGTGTTCTGTTGCTG
TGAAGAGACACCAAGGTAAACCCTGAAGATAAACCAAGGCAACTCTTATA
AAAGAAAGCATTTCATTGGGGGCTGGCTTACAGTCTCAGAGGGTTAGTCC
ATTATCATCATGGCAGGGTGTACGGCAGAACACACGGCACTGGAGCAGTA
GCTGAGAGCTCCACCCTGATCCACAGGCTGAGAACAAGAGAACCTCAAAG
CCCACCCCACCAGTGACACACTTCTTCCAACAAGGACACATATTTGAACC
ATGTCAGAAGGCCTCACTCCTGGTGGATAAGCGTTCATATATGAACTCTT
ATTCACAAGGCCACACAAGCTCCACCCATTTCTACCTGGGAACGTGTCTG
AAAGTTCCACACTCCTCGTCATGACTCCAGGAGCTCTGAAAGCCACCTCA
TTAGCAAGAAATGACACATCTGCCACTCTGAAGATCGCAAGGGTTTCAGG
AGCTCCGTGTTAGTGAACCAGGGACCAAGGCCAAACAGAGACTCTGTTCT
ATATCCCAACTCCACAATGTAAATTTCCCATTTCCCTGCTTGGACCTCTG
ACCTGCTGGCTGCACCTGCCTCTTGTGACCAGACCTCTCCCCACATTCAC
TCTGCTCTTCG

Query= MSMg01no507_e15.b1 MSMg01no507_e15.b1 CHROMAT_FILE:
MSMg01no507_e15.b1 PHD_FILE: MSMg01no507_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:47 2005
         (698 letters)



>mm_chr6_54947162_54948260
          Length = 1099

 Score = 1266 bits (655), Expect = 0.0
 Identities = 685/695 (98%), Gaps = 1/695 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgt-atttccatgcatgtctttgaaaggccctctgtgggccgggggtgagct 63
           ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgtaaattcaatgcatgtctttgaaaggccctctgtgggccgggggtgagct 264

                                                                       
Query: 64  ttagggtgctaaaagccaacctgagacaggtactctggagttcttctctggccagtgagg 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 ttagggtgctaaaagccaacctgagacaggtgctctggagttcttctctggccagtgagg 324

                                                                       
Query: 124 aataaaaacgaaagaatagagaagtgagcaaagcaaagggagatgattaagaaaaactga 183
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataaagacgcaagaatagagaagtgagcaaagcaaagggagatgattaagaaaaactga 384

                                                                       
Query: 184 gaaaactcccgagcggacagggacccaaaggacaatgaaaatggatgtaccacctgcatg 243
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaactcctgagcggacaggaacccaaaggacaatgaaaatggatgtaccacctgcatg 444

                                                                       
Query: 244 gtccttttataggacttacagcagatactggacaaagattgagggactttgtctattgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtccttttataggacttacagcagatactggacaaagattgagggactttgtctattgag 504

                                                                       
Query: 304 attgcttaatttggggcatattgtgggccaggtcagtgggtcacccacgcactgaaaagg 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcgcttaatttggggcatattgtgggccaggtcagtgggtcacccacgcactgaaaagg 564

                                                                       
Query: 364 tgtcttcccgctgcttgcccagtgggagagtcacacattgaagccccactctgtccaact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcttcccgctgcttgcccagtgggagagtcacacattgaagccccactctgtccaact 624

                                                                       
Query: 424 ttaacctattggttggctggtgaccttggctcacctgctcacgatgccaaccttagcaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaacctattggttggctggtgaccttggctcacctgctcacgatgccaaccttagcaag 684

                                                                       
Query: 484 tgtggctggtctctgaccttggcaggaatcttgctgttctttgttctcaacgtttagctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtggctggtctctgaccttggcaggaatcttgctgttctttgttctcaacgtttagctg 744

                                                                       
Query: 544 gctggtttgtagtttaactacaggcctcttttcttttcctgcctacagagagctatctgc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 gctggtttgtagtttaactacaggcctcttttcttttcctgcctacagagagctacctgc 804

                                                                       
Query: 604 tgccaggaacgcatttaacccagcgtgggcaaatgacttaagtgcccagacagagcaggt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgccaggaacgcatttaacccagcgtgggcaaatgacttaagtgcccagacagagcaggt 864

                                              
Query: 664 gactgaatgagggacaacatccctgtcagccttcc 698
           |||||||||||||||||||||||||||||||||||
Sbjct: 865 gactgaatgagggacaacatccctgtcagccttcc 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space:   749232
Effective search space used:   749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)