Query= MSMg01no507_k20.b1 MSMg01no507_k20.b1 CHROMAT_FILE:
MSMg01no507_k20.b1 PHD_FILE: MSMg01no507_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:18 2005
(666 letters)
>mm_chr6_118194449_118195513
Length = 1065
Score = 571 bits (295), Expect = e-167
Identities = 310/315 (98%), Gaps = 1/315 (0%)
Strand = Plus / Minus
Query: 7 gaattccaaattcaatattaactaccagaaaaaaataaaacagacttggcagctttcagt 66
||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 314 gaattccaaattcaagaataactaccag-aaaaaataaaacagacttggcagctttcagt 256
Query: 67 aacataactacataaaaagtttaattcgtgtatttggatttgctagaaggaggactgacc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacataactacataaaaagtttaattcgtgtatttggatttgctagaaggaggactgacc 196
Query: 127 acatccttggcactgttcaaggtgttgaaggtacgacatcgaacagacaaaagttcccca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acatccttggcactgttcaaggtgttgaaggtacgacatcgaacagacaaaagttcccca 136
Query: 187 cctccatgaggatatatcccatagaaaaaacataaaataatcaacgttaatcaataaata 246
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 135 cctccatgaggatatatcccatagaaaaaacataaaataatcaatgttaatcaataaata 76
Query: 247 tgtggtgtacttgctgttaagcaatgttttagaaacaaagcagagagggaacaagtgagc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 75 tgtggtgtacttgctgttaagcaatgttttagaaacaaagcagagagggaacaagcgagc 16
Query: 307 cctgaaggtggtttg 321
|||||||||||||||
Sbjct: 15 cctgaaggtggtttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_k20.g1 MSMg01no507_k20.g1 CHROMAT_FILE:
MSMg01no507_k20.g1 PHD_FILE: MSMg01no507_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:18 2005
(525 letters)
>mm_chr6_118031304_118032228
Length = 925
Score = 919 bits (475), Expect = 0.0
Identities = 511/525 (97%), Gaps = 4/525 (0%)
Strand = Plus / Plus
Query: 1 attatataggctggcctttaactcacagagatccacctgcctctaactctagagtgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 attatataggctggcctttaactcacagagatccacctgcctctaactctagagtgctgg 264
Query: 61 gattaaaggtgtgtatcactatgcctggctatatttaattgattgattgattgaatatat 120
||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 265 gattaaaggtgtgcatcactatacctggatatattta----attgattgattgaatatat 320
Query: 121 attcatatatttaaatatttatatatgaatatatgtatatatatgtatattcatatataa 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 attcatatatttaaatatttatatatgaatatatttatatatatgtatattcatatataa 380
Query: 181 atattttgcctgcatatatacctggaacctctggactagagtaaagagacagttgtgaac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctattttgcctgcatatatacctggaacctctggactagagtaaagagacagttgtgaac 440
Query: 241 tgccatgtggatgttaggaattaaagctgggtcctgtggaagagcagcaagtgctcctaa 300
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tgccatgtggatgctaggaattaaagccgggtcctgtggaagagcagcaagtgctcctaa 500
Query: 301 ccactgagccatctctccatcctctcaagggcagtgatttgagctgcttggcttctctgt 360
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 501 ccactgagccatctctccatcctctcaagggcagtgctttgggctgcttggcttctctgt 560
Query: 361 ctttaaggccacccttgccctccctgggctctggcaaggcaagccttccctgtgcttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttaaggccacccttgccctccctgggctctggcaaggcaagccttccctgtgcttcct 620
Query: 421 tccatccagccagcctataagccctgtcaaggaatagttagggctgactatggtgctgat 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccatccatccagcctataagccctgtcaaggaatagttagggctgactatggtgctgat 680
Query: 481 ggtacagaaatggctggtgagagactgggacagaggaagcctagg 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtacagaaatggctggtgagagactgggacagaggaagcctagg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
