Query= MSMg01no507_n04.b1 MSMg01no507_n04.b1 CHROMAT_FILE:
MSMg01no507_n04.b1 PHD_FILE: MSMg01no507_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:30 2005
(713 letters)
>mm_chr6_114750924_114752036
Length = 1113
Score = 1315 bits (680), Expect = 0.0
Identities = 703/714 (98%), Gaps = 8/714 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgtggcttttcac----tcctgcttttctccttaatgtcacctgaagaggaca 59
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 913 ggaattctgtggc---tcactacatcctgcttttctccttaatgtcacctgaagaggaca 857
Query: 60 ttctctcagaagccatcagtttagtggaaagccctgctctgcacaaggccgtggctggta 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 856 ttctctcagaagccatcagtttagtggaaagccctgctctgcacaaggcagtggctggta 797
Query: 120 aaagtaggctttagtgctttgcacttcctggtcgacatcaatggacagccctgatgtgca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aaagtaggctttagtgctttgcacttcctggtcgacatcaatggacagccctgatgtgca 737
Query: 180 tcttacaccacaagtgctacctgcaagttggcaagtgagagaaactgactgaattgtgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcttacaccacaagtgctacctgcaagttggcaagtgagagaaactgactgaattgtgca 677
Query: 240 gcttccctgaggtaggccagagatatcaggggacaaagggctatgatgatcttcaagcca 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 676 gcttccctgaggtaggccagagatatcaggggacaaagggc-atgatgatcttcaagcca 618
Query: 300 ccactgagctatgaaaaaggatgctcagagctcctactgttcctccaaattaagataccc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccactgagctatgaaaaaggatgctcagagctcctactgttcctccaaattaagataccc 558
Query: 360 cttctcacagcaccagaaaacccatcaactcagcaagcacatagctcatctgcttaggac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttctcacagcaccagaaaacccatcaactcagcaagcacatagctcatctgcttaggac 498
Query: 420 atgggtactgtggccacttacatcattattgtggctataaatgaagtattttgtcctgaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgggtactgtggccacttacatcattattgtggctataaatgaagtattttgtcctgaa 438
Query: 480 gtggctcagggctggatgctagtaattagtaagctaatttctgaattaatttcccacatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtggctcagggctggatgctagtaattagtaagctaatttctgaattaatttcccacatt 378
Query: 540 ggaagtatggtgtagggagtgagatcctccaccctccccaatccctgcactgttcctaag 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 ggaagtatggtgtagggagtgagatcctccaccctccccaacccctgcactgttcctaag 318
Query: 600 tcataagccagttgaaggcctgcaaatcttaacatttacaaagtggttagcagaacactt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcataagccagttgaaggcctgcaaatcttaacatttacaaagtggttagcagaacactt 258
Query: 660 gggatataagcatcagcctcttcaacagccagcccctgcttatctggggggtgc 713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 gggatataagcatcagcctctccaacagccagcccctgcttatctggggggtgc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_n04.g1 MSMg01no507_n04.g1 CHROMAT_FILE:
MSMg01no507_n04.g1 PHD_FILE: MSMg01no507_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:30 2005
(552 letters)
>mm_chr6_114601158_114602109
Length = 952
Score = 1009 bits (522), Expect = 0.0
Identities = 543/552 (98%), Gaps = 4/552 (0%)
Strand = Plus / Plus
Query: 1 agtgctcacaaggccaaggtgggaggaagttgaagcctgcctaatctatatagtgagact 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agtgctcacaaggccaaggtgggaggaagttgaagcctgcctaagctatatagtgagact 260
Query: 61 gtctcaaaaaataatattcataaattactgactgtacggtgaagatgaggtgcagaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcaaaaaataatattcataaattactgactgtacggtgaagatgaggtgcagaagtg 320
Query: 121 cttttggaaggtgcagtgtctgtagaaagaatggcgaggctgagatgtgcacggggaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttggaaggtgcagtgtctgtagaaagaatggcgaggctgagatgtgcacggggaaag 380
Query: 181 gagatacctgggtgaatgtcgggcaggaatgttccatgctgtgcaggagccactggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatacctgggtgaatgtcgggcaggaatgttccatgctgtgcaggagccactggagga 440
Query: 241 tctggaatttttgtggaagcaaaacagcttcctttcttttttctttaattttgaaatagc 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggaattggtgtggaagcaaaacagcttcctttcttttttctttaattttgaaatagc 500
Query: 301 atcttactctagtacaggctggcctcaaactcatgatcctcttgccccactgtccccaga 360
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 atcttactctagtataggctggcctcaaactcatgatcctcttgcctcactgtccccaga 560
Query: 361 gctggggttgcaggtttgtgctgcactccccagtttacccttctccttttgctctatcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggggttgcaggtttgtgctgcactccccagtttacccttctccttttgctctatcat 620
Query: 421 agtgtgtaagtgtgtgtgtgcctgtgtgtttgtgtacgggtatacacatgtgtgcaagtg 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 agtgtgtaagtgtgtgtgtgcctgtgtgtttgtgtacgggtatacacatg----caagtg 676
Query: 481 catgcatggaggtcagaggcagacaatcagtgtcttgcctgccattcttctccttattcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catgcatggaggtcagaggcagacaatcagtgtcttgcctgccattcttctccttattcc 736
Query: 541 tttgtaccagga 552
||||||||||||
Sbjct: 737 tttgtaccagga 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
