BAC Information

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BAC

Clone NameMSMg01-508B04
Chromosome6 (Build37)
Map Location 88,607,444 - 88,785,917
singlet/doubletdoublet
Overlap geneMgll, Abtb1
Upstream gene2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik
Downstream genePodxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508B04.T7 (MSMg01no508_b04.b1)MSMg01-508B04.TJ (MSMg01no508_b04.g1)
ACCAG582071AG582072
length750751
length of high quality
(start - end)		684 (53 - 736)633 (78 - 710)
definitionCHROMAT_FILE: MSMg01no508_b04.b1 PHD_FILE: MSMg01no508_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:51 2005CHROMAT_FILE: MSMg01no508_b04.g1 PHD_FILE: MSMg01no508_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,607,444 - 88,608,115)(88,785,290 - 88,785,917)
sequence
NNNCCGACCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTGCAGAGCTCAGCACTCTCTGGAGAAAGATGGAAGT
CTAGAATCTCAGGGTATCAGGGGTCACAAGTGACTAGAATGCATTATAAA
ATGATTTCTGTATTTAAAGGAGAAAAATAGGTTCACCATCAAAGAAGGAA
ACAGGTTTGGTTTTGTTCTGGTTTTTTAGGGCAGAGCCAGAGAAGAGCTA
GATGTTGGGATCAGCACTTAGAGCTTTAAAATGGGCCCAGGGAGGTAGCT
CAGCCACTAAGGTGCTTTCCATGCAATCACAAGGACCCACTTTGACTGTC
CAGGATCCACATAAAAGCACTATGTATGGAGGTGTATGCCTATAGTCTCA
GCATTGGAGAGGCAGAGATAAGAGGGTTCCTGTGGCTTGCTGCTCAGCCT
CTTTTTATCCAAACTGCTGAGCCTTGAGCTCAGTAAAAGTCCCTGTCTAA
AAAATTAGGTGGAGAGTGATTGAGGAAGACATTCCACATTGGCCTCTGGA
CCCCACATACATGTACACACACAGACAAAAAAAAAAACAAAAAAAAAACA
AACAACCAAAAAAAATGGTAAACTAGGGAAATGGCTCAGTGGGTAAAGAT
TCTTGCTCTCAAGCTTATTGATCTGAGTTCAATCCCTGGGACCCACAAGG
GCAGAAGGAGAGGGCCAAACAAGCTGTCCTTTGACCCTCATAATATTCAG


NNNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGGGGACCTGAGCCTGTTG
TTGGGGTACAGCTTGCGGGGGTGGGGGCAGGCTTTGGGGAGTGGAGCTGG
TGAGGAGAGGAAGCTGGGGACTGTGGATAGGGGACTTGGGCATTCTTAGC
GGGACACTCCATGGAGGGTGACCCAGAGGCTTGGAGAAGAGGTTCTCTGA
TCTGAGCCAGTAGGCCTGTATCCCTGCCACTTAACCACACCCGGTGTGAC
TCCATGGCCTAACTACAGAGACACAGACAGAGGACTATGGTATTCCCTGG
ATGCCTCAGGCCAATGGACCACACCCCTCCCCCACACTCCAGTAGAACTT
TGCTTTGTCCCCAGTGCTAGACAGCTGTCAGTCTACATGTTGTCCTGCAG
TGCCATAGATCTCCTCACCTTTGTGTTTGTCATGTCCCAGAACTTTCTAG
ATTATTTTCCTCTTCCTCACCAGTGCATTTCCATTTGTTTTGCTCTTGTG
TGTTCATCTTTTGGGGAAAGACCTGAAGCTGCCAGCTAGGACAGGTGGCC
TCGAGTCAGGGTTGCTGGCAGAGGGTTGCAAAGATAGAAGGCAGTTTGCC
ACTGAGCCCACCACAAACAGAGGGGAAGCCAAGATGGGTGGTGGGGTCTC
ACTGGCTCTGCCTTTGTGCCTGTTCTTACATGTCTGAGTTCCAAACGGGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_b04.b1 MSMg01no508_b04.b1 CHROMAT_FILE:
MSMg01no508_b04.b1 PHD_FILE: MSMg01no508_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:51 2005
         (684 letters)



>mm_chr6_88607240_88608325
          Length = 1086

 Score = 1210 bits (626), Expect = 0.0
 Identities = 664/682 (97%), Gaps = 12/682 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgcagagctcagcactctctggagaaagatggaagtctagaatctc--aggg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 205 gaattcagtgcagagctcagcactctctggagaaagatggaagtctagaatctcttaggg 264

                                                                       
Query: 63  tatcaggggtcacaagtgactagaatgcattataaaatgatttctgtatttaaaggagaa 122
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatcaggggtcacaagtgaccagaatgcattataaaatgatttctgtatttaaaggagaa 324

                                                                       
Query: 123 aaataggttcaccatcaaagaaggaaacaggtttggttttgttctggttttttagggcag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaataggttcaccatcaaagaaggaaacaggtttggttttgttctggttttttagggcag 384

                                                                       
Query: 183 agccagagaagagctagatgttgggatcagcacttagagctttaaaatgggcccagggag 242
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agccagagaagagctagatgttgggatcagcacttagagctttaagatgggcccagggag 444

                                                                       
Query: 243 gtagctcagccactaaggtgctttccatgcaatcacaaggacccactttgactgtccagg 302
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtacctcagccactaaggtgctttccatgcaatcacaaggacccactttgactgtccagg 504

                                                                       
Query: 303 atccacataaaagcactatgtatggaggtgtatgcctatagtctcagcattggagaggca 362
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atccacataaaagcactatgtgtggaggtgtatgcctatagtctcagcattggagaggca 564

                                                                       
Query: 363 gagataagagggttcctgtggcttgctgctcagcctctttttatccaaactgctgagcct 422
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagataagagagttcctgtggcttgctgctcagcctctttttatccaaactgctgagcct 624

                                                                       
Query: 423 tgagctcagtaaaagtccctgtctaaaaaattaggtggagagtgattgaggaagacattc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgagctcagtaaaagtccctgtctaaaaaattaggtggagagtgattgaggaagacattc 684

                                                                       
Query: 483 cacattggcctctggaccccacatacatgtacacacacagacaaaaaaaaaaacaaaaaa 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||
Sbjct: 685 cacattggcctctggaccccacatacatgtacacacacagacaaaaaaaaaaa-----aa 739

                                                                       
Query: 543 aaaacaaacaaccaaaaaaaatggtaaactagggaaatggctcagtgggtaaagattctt 602
           |||||||    || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaacaa----cctaaaaaa-tggtaaactagggaaatggctcagtgggtaaagattctt 794

                                                                       
Query: 603 gctctcaagcttattgatctgagttcaatccctgggacccacaagggcagaaggagaggg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gctctcaagcttattgatctgagttcaatccctgggacccacaagggcagaaggagaggg 854

                                 
Query: 663 ccaaacaagctgtcctttgacc 684
           ||||||||||||||||||||||
Sbjct: 855 ccaaacaagctgtcctttgacc 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space:   725224
Effective search space used:   725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no508_b04.g1 MSMg01no508_b04.g1 CHROMAT_FILE:
MSMg01no508_b04.g1 PHD_FILE: MSMg01no508_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:51 2005
         (633 letters)



>mm_chr6_88785090_88786117
          Length = 1028

 Score = 1143 bits (591), Expect = 0.0
 Identities = 621/633 (98%), Gaps = 5/633 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctggggacctgagcctgttgttggggtacagcttgcgggggtgggggcaggctttgg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 828 actctggggacctgagcctgttgttggggtacagcttgcggggg-gggggcaggctttgg 770

                                                                       
Query: 61  ggagtggagctggtgaggagaggaagctggggactgtggataggggacttgggcattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ggagtggagctggtgaggagaggaagctggggactgtggataggggacttgggcattctt 710

                                                                       
Query: 121 agcgggacactccatggagggtgacccagaggcttggagaagaggttctctgatctgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agcgggacactccatggagggtgacccagaggcttggagaagaggttctctgatctgagc 650

                                                                       
Query: 181 cagtaggcctgtatccctgccacttaaccacacccggtgtgactccatggcctaactaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cagtaggcctgtatccctgccacttaaccacacccggtgtgactccatggcctaactaca 590

                                                                       
Query: 241 gagacacagacagaggactatggtattccctggatgcctcaggccaatggaccacacccc 300
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gagac----acagaggactatggtattccctggatgcctcaggccaatggaccacacccc 534

                                                                       
Query: 301 tcccccacactccagtagaactttgctttgtccccagtgctagacagctgtcagtctaca 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcctccacactccagtagaactttgctttgtccccagtgctagacagctgtcagtctaca 474

                                                                       
Query: 361 tgttgtcctgcagtgccatagatctcctcacctttgtgtttgtcatgtcccagaactttc 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 473 tgttgtcctgcagtgccatagatctccccacctttgtgtttgtcatgtcccagaactttc 414

                                                                       
Query: 421 tagattattttcctcttcctcaccagtgcatttccatttgttttgctcttgtgtgttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tagattattttcctcttcctcaccagtgcatttccatttgttttgctcttgtgtgttcat 354

                                                                       
Query: 481 cttttggggaaagacctgaagctgccagctaggacaggtggcctcgagtcagggttgctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttttggggaaagacctgaagctgccagctaggacaggtggcctcgagtcagggttgctg 294

                                                                       
Query: 541 gcagagggttgcaaagatagaaggcagtttgccactgagcccaccacaaacagaggggaa 600
           |||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||
Sbjct: 293 gcagagggttgcaaaggtggaaggcagtttgccactgagcccaccacaagcagaagggaa 234

                                            
Query: 601 gccaagatgggtggtggggtctcactggctctg 633
           ||||||||||| |||||||||||||||||||||
Sbjct: 233 gccaagatgggcggtggggtctcactggctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1028
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1018
Effective search space:   634214
Effective search space used:   634214
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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