BAC Information

Click to search

BAC

Clone NameMSMg01-508B13
Chromosome6 (Build37)
Map Location 73,616,155 - 73,616,508
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508B13.T7 (MSMg01no508_b13.b1)MSMg01-508B13.TJ (MSMg01no508_b13.g1)
ACCAG582089AG582090
length1,491752
length of high quality
(start - end)
---354 (334 - 687)
definitionCHROMAT_FILE: MSMg01no508_b13.b1 PHD_FILE: MSMg01no508_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:53 2005CHROMAT_FILE: MSMg01no508_b13.g1 PHD_FILE: MSMg01no508_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTCTTCTTTTCTANGGCGCGTCGGCAGGTAGAAAAGACAGATCTAA
TCCACGAAGAGTAGCGTGGCATTTGACAGATGCGCAATTATCTTAAACAT
ACGAGAACACGCGACCCAAAGTAGCCATATAGAAGAGATGTATCGCCGCT
ATTATAATAACTCACTACACGAAATATTGCACCCTGTGATCCATGTCCCT
CTCTCCGTATACTGCCTAATGCACCACTTGAGATATATGTGGGTTAGGTG
GGTTAAGGCGTCTATCATCCACCGATATTATCTAGCTAACAGACCATATA
AGAGAAAGCGTATGATATGTGGTGCGCACGTGCCGTGTGTGTAGAGCCGC
GTTGCATGGATCTGCACAGTGCTGTAACGAATCTCCGTCGCACTGCTAGC
TGGACCATAGGTAGGTGATCTCCGCATACCTATATGATAGGTGTCACATC
TCGCGGTTATCTATATCTAGACAATGAAGACGAGAAGAGGTTAGATTATC
ATTACTAGACTATGACACAACACACATATTTAATCTTGTACCTCGATTAC
CTCACTGTATCGTATATGACGCCATCAGTCTTATATGACCAGATACACGC
TACGATGACAAATGTACCAAGTANTGTATGTACTGTATCGAACACATTAC
TTATGTACTCATTCGCTATCAATACGCCAATCATGTAGACTATAGATATA
TCGAGTATAGTTGTCATAGAAGTCATGTGTCGCAGCACACAGTCTGGCGC
GCCTTCAGGTAGTTATNTTGATACTAATGTTATCTCGCGTAGCTGCTAGT
AGTGTAGTTAGACGTAACAGCTGTGACGCAATTNTAAATCGCGAATATAA
CTGTTAATGAAATATCTACATAATGATATTGAGCGCTCACAGCCTCTACA
GCGCAAGAGAGACCGTCTATGAGTCTCGACGNCTGCATGTCTAGAGGTAT
CACGACTATGATGTATATCGTCANTGTGTATATGANACATATCACGTATG
TGATGATCTGGCACCGTGATATACCACGATAGTGATGTGGTCGCNACGCG
ATGGTCATGACGCATTATANTAGTCTATCTACTCTACTATATATGATCTC
AGACTACACTTCGCGCGAGCGCATCGGCTTGTATGATCAGTANAGTCGAA
TGATATATAGATCCGCGCACGTCGTTATGTGNGTGTAGAGNTGGCATANG
TCGTAGAGGGCAGTATGATAGATCAGCACACGGCCGCGCAGATCTGGATC
GCGCACNANGAGATGATAATGATACTAGCTGCGTAGCAACATCGCCNAGA
TCATCTATTGTATCACAACATCATCTNCACGCTATAATTATATGAGTATT
TGTAGTGTGCATTCGCATANGNGACTACNATGCNGCACATACTACTATAT
AGAGTGATTNANGTATATAATAAACTGCTTAAGCACCANATGATGATATA
CTACAGCAGCCGCGTACATCTACTCTACAGACTCAGATGAN
NNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTATAGTAGCCACTTAATTTATA
TTAGTCTCTTGACTCTGGTTGCTGTGCAATGTTAGTTACTTTTCTCATTG
CTATGGCAAAACACACAAATAAAGCAACCAGGATGGTACCTTTTGTTGGC
TCATTGTTTCTCAGTACAGTCATTTGTGGTAGGTATGGCAAAGTGACAGG
TTTGCGAGGCAACTGGTCCCATTGTATCTATAGTCAGAGAGAAGTGAGCG
TGGCGGTGAGTTCACTTTCCCCATTTCTCTCAGAACAGGAACCCAGATCA
CAGAATGGCTTTTTATGTTCAGGGAAGCTCTTCCCTTCCGAATTAACCCA
ACGTAGAAACTCCCTCATAAACACACTCCAAGTTCCGTCTCCTAGATGAT
TCTAGGAGCATTACAGATAGTCAGGCAATGTGACTCCCATCATCCATATC
TTCAAAACACAAAAGGACATAGCAAACCTTGGTCCTTGTGAAATGACCAC
AATAAATCTTGTGCTGAAAGGTTCTTTTCCTACGAACATTCTGGAAACAT
CCCTTGTACTTACAAAACTGTTCAAAGTTACTAATTGCCAGGACATTTAG
TCACAAGTCTATGGTTAAATGTATTCTATGTTGATAATATGTCAGATAAG
AAATCCTTAAATCTGACTGAGGATAACCAAATTCCAACGAACTACCTAGA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_b13.g1 MSMg01no508_b13.g1 CHROMAT_FILE:
MSMg01no508_b13.g1 PHD_FILE: MSMg01no508_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:53 2005
         (354 letters)



>mm_chr6_73615834_73616587
          Length = 754

 Score =  677 bits (350), Expect = 0.0
 Identities = 353/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaggaacccagatcacagaatggctttttatgttcagggaagctcttcccttccgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aacaggaacccagatcacagaatggctttttatgttcagggaagctcttcccttccgaat 616

                                                                       
Query: 61  taacccaacgtagaaactccctcataaacacactccaagttccgtctcctagatgattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 taacccaacgtagaaactccctcataaacacactccaagttccgtctcctagatgattct 556

                                                                       
Query: 121 aggagcattacagatagtcaggcaatgtgactcccatcatccatatcttcaaaacacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggagcattacagatagtcaggcaatgtgactcccatcatccatatcttcaaaacacaaa 496

                                                                       
Query: 181 aggacatagcaaaccttggtccttgtgaaatgaccacaataaatcttgtgctgaaaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggacatagcaaaccttggtccttgtgaaatgaccacaataaatcttgtgctgaaaggtt 436

                                                                       
Query: 241 cttttcctacgaacattctggaaacatcccttgtacttacaaaactgttcaaagttacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttttcctacgaacattctggaaacatcccttgtacttacaaaactgttcaaagttacta 376

                                                                 
Query: 301 attgccaggacatttagtcacaagtctatggttaaatgtattctatgttgataa 354
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 attgccaggacatttagtcacaagtctatggctaaatgtattctatgttgataa 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)