Query= MSMg01no508_i24.b1 MSMg01no508_i24.b1 CHROMAT_FILE:
MSMg01no508_i24.b1 PHD_FILE: MSMg01no508_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:30 2005
(505 letters)
>mm_chr6_145578232_145579136
Length = 905
Score = 861 bits (445), Expect = 0.0
Identities = 476/501 (95%), Gaps = 24/501 (4%)
Strand = Plus / Minus
Query: 5 gaattccttaccttatcatgggggcctcaggtggtactcagagcatgctgctgtttctta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattccttaccttatcatgggggcctcaggtggtactcagagcatgctgctgtttctta 431
Query: 65 ttacgtcagggggtccagcaacctttctccaccctcaaaccactcagcaagcctctcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttacgtcagggggtccagcaacctttctccaccctcaaaccactcagcaagcctctcctt 371
Query: 125 atcacactcaccaatgttggagactcaggatcaccaggcagctaacccaacacagggata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atcacactcaccaatgttggagactcaggatcaccaggcagctaacccaacacagggata 311
Query: 185 cagtgactcttgactaactgggtatgttgtgtcagagcatggccacttctattttatcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cagtgactcttgactaactgggtatgttgtgtcagagcatggccacttctattttatcaa 251
Query: 245 acaaaggaatagaagttgcagttgtgcgtgtggagagacttcaacttcaacagctcagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acaaaggaatagaagttgcagttgtgcgtgtggagagacttcaacttcaacagctcagag 191
Query: 305 ctcttgctgtcctagcagaggagcagaactcagctcccagcacccacactgggtgctcac 364
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctcttgctgtcct--------agcagaactcagctcccagcacccacactgggtgctcac 139
Query: 365 aacccctgtaactccaggtgcaggggacctgatgaactcttctggcctctgtggacacat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aacccctgtaactccaggtgcaggggacctgatgaactcttctggcctctgtggacacat 79
Query: 425 gcatgatgtgaacacacacacacacacacacacacacacacacgcacacaaagcccaatg 484
||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 78 gcatgatgtga----------------acacacacacgcacacgcacacaaagcccaatg 35
Query: 485 agggctcatgggaagaacaga 505
|||||||||||||||||||||
Sbjct: 34 agggctcatgggaagaacaga 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_i24.g1 MSMg01no508_i24.g1 CHROMAT_FILE:
MSMg01no508_i24.g1 PHD_FILE: MSMg01no508_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:30 2005
(540 letters)
>mm_chr6_145422300_145423242
Length = 943
Score = 988 bits (511), Expect = 0.0
Identities = 534/543 (98%), Gaps = 3/543 (0%)
Strand = Plus / Plus
Query: 1 ccagggatctgatacactcttctgggcacccatatacaatgtatatacattgtatacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagggatctgatacactcttctgggcacccatatacaatgtatatacattgtatacaca 260
Query: 61 caggtacatacacatgaacaaattaattaaacaaaaaaattaaagaaaaatcaacttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtacatacacatgaacaaattaattaaacaaaaaaattaaagaaaaatcaacttagt 320
Query: 121 gagtttaaagttttccagatcgtttgtctccttctgtgctgttgtgtcctagggaaggta 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtttaaagttttccagatcctttgtctccttctgtgctgttgtgtcctagggaaggta 380
Query: 181 accctttaactcccaatggatcttgtcacaagacgtgtctctgccccccttcccaggtct 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accctttaactccccatggatcttgtcacaagacgtgtctctgccccccttcccaggtct 440
Query: 241 ctcagaggctgcttttccttggttggccactcactggcagtaggaaatcgcttct---gt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ctcagaggctgcttttccttggttggccactcactggcagtaggaaatcgcttcttctgt 500
Query: 298 cttgggctttcctttgcttgtcggacttacaagggcagtgataaatttccttcttaggtc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgggctttcctttgcttgtcggacttacaagggcagtgataaatttccttcttaggtc 560
Query: 358 ccttgcttctcttcatgttcagattctgtgactggagaagcggttttacccacaccaggt 417
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 561 ccttgcttctcttcgtgttcagattctgtgactggagaagcggttttacccgcatcaggt 620
Query: 418 atctttttatggatggttattcttaagccagaagatgcttacacatttttaattggccaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctttttatggatggttattcttaagccagaagatgcttacacatttttaattggccaa 680
Query: 478 gaaatcaactatgtctttggaggtaagaggaaatacaatccacaagtaatgataatggaa 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 gaaatcaactatgtctttggaggtaaaaggaaatacaatccacaagtaatgataatggaa 740
Query: 538 aaa 540
|||
Sbjct: 741 aaa 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 943
Length adjustment: 10
Effective length of query: 530
Effective length of database: 933
Effective search space: 494490
Effective search space used: 494490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
