NNNNNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGAAGACCTCAACTCTGTCTTTTTCCTTGATGCCCTA
GACAGCTTTCTAAGACAGTGTAGCAGCATGTAAGCAAAGGGAAAGGATTG
TTTCAAAAACAGGAAAGGAACTGAAAATTCTAAACTGCAAGAAAATTAAC
ACTGCACAGGGATACCTTCCTAACACTGGGCAAAGGAGCGCATAAGGGAA
AGGGGGTTAAAATAACAATAAATTTCCAGGGAACAATGTCAAATTGATCA
CACATTTTATTTACATGTTTCCAGAAGACAAAGTATATAAAAAAGCAATA
ATAAGGGCCACGATACCAAGTCAGCAAGCACAAGGACCTGTGGTCAACTC
CAAGAAGCCACAATAAAAACCAAGCAGGTATGGCACTTGCTTGTGACCTC
AGCTCTGGGAGGCAAAGCAGGAGGGTCTCTGGGATGTGCTGGCCAGCCTG
CATAGTCTAGTCACTGAGGTCCAAGGTTAGGGAAAGTTATTGTCTCAAAA
ACAGATGCACTATGCCTGAGGAGAGGCACCTGGGATTGTTCTCCGGCCTG
TTCATGAGTGTACATGTGCACAGGAACAAACATGGCCACTCACACATAAG
TGATGATAAGCTAGATTAAAATTAACACAAGAACTTTCAGATAGTTGAGT
ACAAAGGCACTTGTCACTTCAGCTTGGCAGCATAACTTTGATCTCTGGGA
ACCACGTAAAN

CCAATGGCACCATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCCCCAATTCAATTACTAAGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCCCNNCNNCCA
ANNTCNCGCCCCTCTCCACCCTCCCCCTCCCCCCCCTCCAGCTCCCCTCC
TGCCTGCGAGGCCCCCCGCCCACCTCCCTTCCCCCCCCCCCCCCCCTTTC
CCTCCCCTTGCGCCCCCCTCTCCTTTCCGCTTGTTTGCCCCCCCCTCCCC
CCCCTCCCCCCCCCCCGCGCCCCCCCCCCCCCCCTTTTTTTTTTTCGCGC
CCCCCCCCTCCCCCCCCCTCCCCACCACACCCCCCCCCCACCCAACCCAA
CAAACCCAACAAAAACACCAAACAAACACAAAAACCCCCCCCCCCCCCAC
AACAAAATAAAATCCCCCCCCACAACCCAAAATACCCACACCACCCCCCA
CCCCACCCCACCCCCCCCACCCCCCCCCCCCCCTACAAAACCGACACCCA
CCAACACATCCCCCCACACCACCCCTCCCCACCCCAACCCTCCACCACTA
CACCCCTCAACTCCCCTCCACTACCCCCCCCCCCCCCACCCCCAAAAACC
CACCATTCCTACAACACACCCACCCACCCCCCCACACAACCCCCCCAACC
CACACCCCCCCTCAATAACAACCACACTCCCCCCCCTTCAACACTCACCA
CCCAATCCCACCCTCCACCAATATACACCCTCCCACCCCCACACACACCA
CCTCCACACTCCCCACCCACCCAACCACCACCACCC

Query= MSMg01no508_j23.b1 MSMg01no508_j23.b1 CHROMAT_FILE:
MSMg01no508_j23.b1 PHD_FILE: MSMg01no508_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:35 2005
         (532 letters)



>mm_chr6_16934508_16935439
          Length = 932

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgtctttttccttgatgccctagacagctttctaagacagtgtagcagcatgtaagc 60
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctctgtcttttttcttgatgccctagacagctttctaagacagtgtaggagcatgtaagc 260

                                                                       
Query: 61  aaagggaaaggattgtttcaaaaacaggaaaggaactgaaaattctaaactgcaagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagggaaaggattgtttcaaaaacaggaaaggaactgaaaattctaaactgcaagaaaa 320

                                                                       
Query: 121 ttaacactgcacagggataccttcctaacactgggcaaaggagcgcataagggaaagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacactgcacagggataccttcctaacactgggcaaaggagcgcataagggaaagggg 380

                                                                       
Query: 181 gttaaaataacaataaatttccagggaacaatgtcaaattgatcacacattttatttaca 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gttaaaataacaataaatttccagggaacaatatcaaattgatcacacattttatttaca 440

                                                                       
Query: 241 tgtttccagaagacaaagtatataaaaaagcaataataagggccacgataccaagtcagc 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttccagaagacaaagtaaataaaaaagcaataataagggccacgataccaagtcagc 500

                                                                       
Query: 301 aagcacaaggacctgtggtcaactccaagaagccacaataaaaaccaagcaggtatggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcacaaggacctgtggtcaactccaagaagccacaataaaaaccaagcaggtatggca 560

                                                                       
Query: 361 cttgcttgtgacctcagctctgggaggcaaagcaggagggtctctgggatgtgctggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgcttgtgacctcagctctgggaggcaaagcaggagggtctctgggatgtgctggcca 620

                                                                       
Query: 421 gcctgcatagtctagtcactgaggtccaaggttagggaaagttattgtctcaaaaacaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgcatagtctagtcactgaggtccaaggttagggaaagttattgtctcaaaaacaga 680

                                                               
Query: 481 tgcactatgcctgaggagaggcacctgggattgttctccggcctgttcatga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcactatgcctgaggagaggcacctgggattgttctccggcctgttcatga 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)