Query= MSMg01no509_f22.b1 MSMg01no509_f22.b1 CHROMAT_FILE:
MSMg01no509_f22.b1 PHD_FILE: MSMg01no509_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:35 2005
(538 letters)
>mm_chr6_113860556_113861493
Length = 938
Score = 855 bits (442), Expect = 0.0
Identities = 510/542 (94%), Gaps = 16/542 (2%)
Strand = Plus / Minus
Query: 1 tcctctgacctccacatgtgccgcacacctaaacaaacaaacaaacaaacaaacaaacaa 60
||||||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct: 919 tcctctgacctccacgtgtgccgcacacct------------aaacaaacaaacaaataa 872
Query: 61 acaaatgtcattttagaaaattaaaagactgttgggtaaattaaattatgtgatagtccc 120
| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 871 ataaatgtcatcttagaaaattaaaaggctgttgggtaagttaaattatgtgatagtccc 812
Query: 121 ataagaataggacacatgca----cgcacacacacacacacacacacacacacacacaca 176
|||||||||||||||||||| ||| | | | | | ||||||||||||||||||||||
Sbjct: 811 ataagaataggacacatgcacgcgcgcgcgcgcgcgcgcacacacacacacacacacaca 752
Query: 177 cacacacacacactgcagagcctcaaattgccactgggggcgccatcgctcacattccct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 cacacacacacactgcagagcctcaaattgccactgggggcgccatcgctcacattccct 692
Query: 237 tcatccagaaaggatttatatggtctcagcttcaaccataatcttaactaagggttagga 296
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tcatccagaaaggattcatatggtctcagcttcaaccataatcttaactaagggttagga 632
Query: 297 agtagaggaaaaatgagaactagactcatcaggggtgagttcctgctacgtaaaacactt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtagaggaaaaatgagaactagactcatcaggggtgagttcctgctacgtaaaacactt 572
Query: 357 taaacggcattcatgcagagcaagaggtgacggccacctgggaagtcactcacctggaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 571 taaacggcattcatgcagagcaagaggtgacggccacctgggaagtcactcacctagaaa 512
Query: 417 ggggctaattcctcaggatgctggagagttggacaagacactccctggggaacaatgagt 476
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggggataattcctcaggatgctggagagttggacaagacactccctggggaacaatgagt 452
Query: 477 gttttctttttgttcttgataaaccagagtggccgggtgtgttctcagggaacaagaaag 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 451 gttttctttttgttcttgataaaccagagtggccaggtgtgttctcagggaacaagaaag 392
Query: 537 ga 538
||
Sbjct: 391 ga 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_f22.g1 MSMg01no509_f22.g1 CHROMAT_FILE:
MSMg01no509_f22.g1 PHD_FILE: MSMg01no509_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:35 2005
(523 letters)
>mm_chr6_113645893_113646815
Length = 923
Score = 990 bits (512), Expect = 0.0
Identities = 521/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 1 ctgaccctcccctccaacacctccagagggctgcgattacttacaggcttgtgtgacacc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 200 ctgaccctcccctccaacacctccagagggctgcgattacttacagacttgtgtgacacc 259
Query: 61 tgggtaatttggtgattaggatcaaaagcttgcttctcctgtaagtgctctgctattgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgggtaatttggtgattaggatcaaaagcttgcttctcctgtaagtgctctgctattgag 319
Query: 121 ctgcaatcattaccttttctggggttggtgtgggaaggtttgaaacagggtctcaagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgcaatcattaccttttctggggttggtgtgggaaggtttgaaacagggtctcaagaag 379
Query: 181 ttaggaggtgaccttgaactctggatcctctgtcctacggctctcttgatgtggggttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaggaggtgaccttgaactctggatcctctgtcctacggctctcttgatgtggggttat 439
Query: 241 atctcttcttttctctctctctctctctctttttttt-cttttcttttgatctcactcgg 299
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 atctcttcttttctttctctctctctctctttttttttcttttcttttgatctcactcgg 499
Query: 300 aagcctaggttgatcggaactcattagctatcccaaactggcttcgaactcagcagttcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcctaggttgatcggaactcattagctatcccaaactggcttcgaactcagcagttcc 559
Query: 360 ccagcctcagcgacccaaatggaattaccaatgtgagctactatggctgcttcaggcacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagcctcagcgacccaaatggaattaccaatgtgagctactatggctgcttcaggcacc 619
Query: 420 tctctgttctccccaccccccgctattaaaatttttttagttgtagtcaggttctaaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctctgttctccccaccccccgctattaaaatttttttagttgtagtcaggttctaaaac 679
Query: 480 gtctaggctggactttgtcaatcgtcctgcctcttcttcctgag 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtctaggctggactttgtcaatcgtcctgcctcttcttcctgag 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
