Query= MSMg01no509_i03.b1 MSMg01no509_i03.b1 CHROMAT_FILE:
MSMg01no509_i03.b1 PHD_FILE: MSMg01no509_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:45 2005
(656 letters)
>mm_chr6_139742491_139743546
Length = 1056
Score = 1133 bits (586), Expect = 0.0
Identities = 633/654 (96%), Gaps = 11/654 (1%)
Strand = Plus / Plus
Query: 3 tttttttttctgttaaagagtactctttaacacagtggcttttcatttataactttagta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttttttttctgttaaagagtactctttaacacagtggcttttcatttataactttagta 262
Query: 63 caattatgcttctaagcaattaaaattatgtggcaacgtcaaaagagagagtcagatgta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caattatgcttctaagcaattaaaattatgtggcaacgtcaaaagagagagtcagatgta 322
Query: 123 ttcctaaacataataaaaagtccatatgcatactcagttatagttaagaatttaaaattt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcctaaacataataaaaagtccatatgcatactcagttatagttaagaatttaaaattt 382
Query: 183 taacacagcttcaattcagtagaagaaagacagttcagtaaatagggctgagaggcacac 242
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 taacacagcttcaattcagtagaagaaagacagttcagtaaataggactgagaggcacac 442
Query: 243 ttgacttattattagactcataactcagacaatacactaacaaatttcaaatgcatcaca 302
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgacaaaacactagactcataactcagacaatacactaacaaatttcaaatgcatcaca 502
Query: 303 gaattacaagaggcagagagaagagacagtggacatattagaagaaaggtgtgggagaat 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 gaattacaagaggcagagagaagagacagtggacatattagaagaaaagtgtgggagaat 562
Query: 363 ttttaatgaatatgcaaaggcattgttgatatattgtgtattaactattcattgttaaag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttaatgaatatgcaaaggcattgttgatatattgtgtattaactattcattgttaaag 622
Query: 423 atcttgtttcctgggtctggagaaacagctcatggtaagatcctcaccttccaagcataa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atcttgtttcctgggtctggagaaacagctcatggtaagatcctcaccttccaagcataa 682
Query: 483 agacctgagtttgacccccaggattcacaaagaaaatcaaggcaggccagtaggcttgta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agacctgagtttgacccccaggattcacaaagaaaatcaaggcaggccagtaggcttgta 742
Query: 543 attctagccttgggaggtagagacaggaggatccctgaacttgctggtcagccatatacc 602
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 743 actctagccttgggaggtagagacaggaggatccctgaactcgctggtcagccata--c- 799
Query: 603 acataaaacacactagccagtgaaacacagatcccagggagagactgtcttgaa 656
|| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 800 ---ta-----cactagccagtgaaacacagatcccagggagagattgtcttgaa 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_i03.g1 MSMg01no509_i03.g1 CHROMAT_FILE:
MSMg01no509_i03.g1 PHD_FILE: MSMg01no509_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:46 2005
(598 letters)
>mm_chr6_139917275_139918272
Length = 998
Score = 978 bits (506), Expect = 0.0
Identities = 563/582 (96%), Gaps = 3/582 (0%)
Strand = Plus / Minus
Query: 1 ctctttaaaaatgaagcaaatcaaga-taaaaaaacaaaaccgacaacaatttgcatggt 59
|||||||||||||||||||||||||| || | |||||||||| |||||||||| ||||||
Sbjct: 581 ctctttaaaaatgaagcaaatcaagattagagaaacaaaaccaacaacaatttacatggt 522
Query: 60 agatgttttatttttagaacctccagtttgattatcttgaaggcgcactactctgggttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agatgttttatttttagaacctccagtttgattatcttgaaggcgcactactctgggttt 462
Query: 120 gtctactatgctgggaacactctgtaagatcatctactctgttcatggtgagaacagggg 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtctactatgctggtaacactctgtaagatcatctactctgttcatggtgagaacagggg 402
Query: 180 gtaggttcgagtgcaatgatagcatttaacaagtgaagaagagttataaacagtgaactt 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 401 gtaggttcgagtgcaatgatagcatttaacaagtgaaaaagagttataaacagtgaactt 342
Query: 240 gaaagtctgacattctgagtttggggattagtaagacttaaggtgtgagcacattggagg 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaaagtctgacattctgagttt-gggattagtaagacttaaggtgtgagcacattggagg 283
Query: 300 ctgggagacacaatgacaatggattggtcaacatcaaattctaagaactaaatttaaaga 359
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 282 ctgggagacacaatgacaatggattagtcaacatcaaattctaagaactgaatttaaaga 223
Query: 360 ttacagaccgggaccaatgatttggagtcccagccatagggaaacagaggcaggaggacc 419
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttacagatcaggaccaatgatttggagtcccagccatagggaaacagaggcaggaggacc 163
Query: 420 actgtgaatttgggcccagcttggtctacatagtaagttctaggtcagctaggatagata 479
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 162 actgtgattttgggcccagcttggtctacatagtaagttctaggtcagctaggatatata 103
Query: 480 gtaagattcccatcttaaaaacaaaattccctataggaatacaggatttttt-gagaaga 538
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 102 gcaagattcccatcttaaaaacaaaatttcctataggaatacaggatttttttgagaaga 43
Query: 539 acagttgttgatgggtgtgggggcaacaaaaacagtgagaaa 580
||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 42 acagttgttgatgggtgtgggagcaacaaaaacagagagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
