Query= MSMg01no509_i05.b1 MSMg01no509_i05.b1 CHROMAT_FILE:
MSMg01no509_i05.b1 PHD_FILE: MSMg01no509_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:46 2005
(247 letters)
>mm_chr6_101802783_101803429
Length = 647
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%)
Strand = Plus / Plus
Query: 1 tgtccaaaacaactgcaagggcccttgggagtagaaagggtggctgaagggtatgtccag 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgtccaaaacaactgcaagggcccttgggagtagaaatggtggctgaagggtatgtccag 260
Query: 61 aagaaatcatggcagaggagactgcagagagttaaaacctatgaatcagttggtttggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaatcatggcagaggagactgcagagagttaaaacctatgaatcagttggtttggga 320
Query: 121 gatgacagaaggtcacttatgagctcaagtgtcagggtttcttccacgaggttgaaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgacagaaggtcacttatgagctcaagtgtcagggtttcttccacgaggttgaaacag 380
Query: 181 cccttggctggtagacaagaaagaaacagaaagctccatcttactactgcaagaaacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttggctggtagacaagaaagaaacagaaagctccatcttactactgcaagaaacagt 440
Query: 241 attat 245
|||||
Sbjct: 441 attat 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no509_i05.g1 MSMg01no509_i05.g1 CHROMAT_FILE:
MSMg01no509_i05.g1 PHD_FILE: MSMg01no509_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:46 2005
(646 letters)
>mm_chr6_101899751_101900796
Length = 1046
Score = 932 bits (482), Expect = 0.0
Identities = 523/542 (96%), Gaps = 10/542 (1%)
Strand = Plus / Minus
Query: 90 caagagtgaaaaccatgtcactgaaaacaatcagtttcttgtaacattgggtgttatttg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 caagagtgaaaaccatgtcactgaaaacaatcagtttcttgtaacattgggtgttatttg 987
Query: 150 tcaaccctaagtattgttgagatttcagttagaaagaaaaattttattttaaactatgtt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 tcaaccctaagtattgttgagatttcagttagaaagaaaaattttattttaaactatgtt 927
Query: 210 tctgtagattatttgtacttgagatcaatataagtccatagagaggtcagaaaacaaata 269
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 926 tctgtagattatttgtacttgatatcaatataagtccatagagaggtcagaaaacaaata 867
Query: 270 ctagggccagtgtaacacatacctttattcctatcactcagaagacgaaagcaggcaaat 329
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ctagggccagtgtaacacacgcctttattcctatcactcagaagacgaaagcaggcaaat 807
Query: 330 ttctatgagttcataactactctggtctccatgcaaggttcaggccaggaaagactgaga 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttctatgagttcataactactctggtctccatgcaaggttcaggccaggaaagactgaga 747
Query: 390 gtgacactatgcctcaataactaacataaaataaaattttgaaagaaagaaattcgatgg 449
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtgacactatgtctcaataaccaacataaaataaaattttgaaagaaagaaattcgatgg 687
Query: 450 gagaagagatactgagaagagacttgatgcaaccctgactctgttccaacgtctaccttg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gagaagagatactgagaagagacttgatgcaaccctgactctgttccaacgtctaccttg 627
Query: 510 atgaggctcaaatactcaactgttgttaggtgtgacccagtgacattcttggaaaggaaa 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atgaggctcaaatactcaactgttgttaggtgtgacccagtgacattcttggaaaggaaa 567
Query: 570 aataaagagagagagggggggggagagagagagacagagagagagacngagagagagaaa 629
| | ||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 566 gagagagagagaga--------gagagagagagagagagagagaga--gagagagagaaa 517
Query: 630 ga 631
||
Sbjct: 516 ga 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
