BAC Information

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BAC

Clone NameMSMg01-509J05
Chromosome6 (Build37)
Map Location 125,771,447 - 125,772,019
singlet/doubletsinglet
Overlap geneTmem16b
Upstream geneUsp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf
Downstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509J05.T7 (MSMg01no509_j05.b1)MSMg01-509J05.TJ (MSMg01no509_j05.g1)
ACCAG583219AG583220
length752767
length of high quality
(start - end)
659 (49 - 707)573 (80 - 652)
definitionCHROMAT_FILE: MSMg01no509_j05.b1 PHD_FILE: MSMg01no509_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:50 2005CHROMAT_FILE: MSMg01no509_j05.g1 PHD_FILE: MSMg01no509_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTTCTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCGTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCT
TTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGA
CN
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGGGAGTTGAAGAAGGAA
CTATCTAGGTCAGAGGCTCCTTGATTTTGGAATTCAAGTCTCTCTTTATT
TCTCAGAGGAACTAAATAATATGGCCGTCTATTTTTGTGCTTCCCTGGTC
TTCGTGTGCAATAGAATCCCTGGACAAATCATGGCATCATAGAGGTGGGG
CAAAGCTTAGAGGTCAGACATTTTAGTGATCATGGAAGGAATGAAGAGTC
CTGCTGTTTGCAGTGGTAGCTAGCATATGCATAGGGAAGGTGGCTTCTTT
TTCTTCTCTTTCTAATCGGGATGACCTCACTTCAGGGCAGCTTGTAACTC
TGCTGGAGGTTTCAAGGCACTGGAAGGTCATGGAAAGAGAACCAGGATTC
TGCAAAGTCCCCTCTTCCAGTTCTGGTTCTGCTTTCTGTACCGAATCAGA
ATACCCTTTTGCTACTCAGCTTTCCATAACTGTGACAAAACGCCTGGGGC
GGTCAACTTAAAAGTTGGAAAGGCTTGTTCTGGCTCACAGTTTCAGAGCT
TTCTGTCCATGGCCGTTTGGTAGCGTTGGCTTACTTGGGGCTTATGTAGA
CACATCATAGGGACAGCATGTGGTAGAGGAGGCCTGTTCATTTGTGGCCA
CTGTGAGNATGAGTCAGAAAGGGGCTGGAGTCTCACTATTCCCTCCAAAC
TTCTCCTGGTACCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_j05.g1 MSMg01no509_j05.g1 CHROMAT_FILE:
MSMg01no509_j05.g1 PHD_FILE: MSMg01no509_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:51 2005
         (573 letters)



>mm_chr6_125771247_125772219
          Length = 973

 Score = 1093 bits (565), Expect = 0.0
 Identities = 571/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagggagttgaagaaggaactatctaggtcagaggctccttgattttggaattcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagggagttgaagaaggaactatctaggtcagaggctccttgattttggaattcaagt 260

                                                                       
Query: 61  ctctctttatttctcagaggaactaaataatatggccgtctatttttgtgcttccctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctttatttctcagaggaactaaataatatggccgtctatttttgtgcttccctggt 320

                                                                       
Query: 121 cttcgtgtgcaatagaatccctggacaaatcatggcatcatagaggtggggcaaagctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcgtgtgcaatagaatccctggacaaatcatggcatcatagaggtggggcaaagctta 380

                                                                       
Query: 181 gaggtcagacattttagtgatcatggaaggaatgaagagtcctgctgtttgcagtggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtcagacattttagtgatcatggaaggaatgaagagtcctgctgtttgcagtggtag 440

                                                                       
Query: 241 ctagcatatgcatagggaaggtggcttctttttcttctctttctaatcgggatgacctca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcagatgcatagggaaggtggcttctttttcttctctttctaatcgggatgacctca 500

                                                                       
Query: 301 cttcagggcagcttgtaactctgctggaggtttcaaggcactggaaggtcatggaaagag 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcagggcagcttgttactctgctggaggtttcaaggcactggaaggtcatggaaagag 560

                                                                       
Query: 361 aaccaggattctgcaaagtcccctcttccagttctggttctgctttctgtaccgaatcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccaggattctgcaaagtcccctcttccagttctggttctgctttctgtaccgaatcag 620

                                                                       
Query: 421 aatacccttttgctactcagctttccataactgtgacaaaacgcctggggcggtcaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatacccttttgctactcagctttccataactgtgacaaaacgcctggggcggtcaactt 680

                                                                       
Query: 481 aaaagttggaaaggcttgttctggctcacagtttcagagctttctgtccatggccgtttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagttggaaaggcttgttctggctcacagtttcagagctttctgtccatggccgtttg 740

                                            
Query: 541 gtagcgttggcttacttggggcttatgtagaca 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 gtagcgttggcttacttggggcttatgtagaca 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)