Query= MSMg01no509_k07.b1 MSMg01no509_k07.b1 CHROMAT_FILE:
MSMg01no509_k07.b1 PHD_FILE: MSMg01no509_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:56 2005
(308 letters)
>mm_chr6_29303539_29304246
Length = 708
Score = 572 bits (296), Expect = e-168
Identities = 305/308 (99%)
Strand = Plus / Plus
Query: 1 tgacatttagtttccacatccctaacacagttctcttcctttgttctacttcccaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacatttagtttccacatccctaacacagttctcttcctttgttctacttcccaaaact 260
Query: 61 ttgaagcagatccagagagaggtgttttgggggcgcaatttgattaacagcttatcaatt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 261 ttgaagcagatccagagagaggtgttttgggggtgcaatttgattaacagcttctcaatt 320
Query: 121 agatgctttgctgagagaattttctgattggataagtatttgcatatacatgtgagtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgctttgctgagagaattttctgattggataagtatttgcatatacatgtgagtgct 380
Query: 181 tagactagttagtttcgatagtgatgtccctaggaaaggaaaaccatttgttgctgaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagactagttagtttcgatagtgatgtccctaggaaaggaaaaccatttgttgctgaggt 440
Query: 241 ttaatctttagatttgggcagagtgggctggagagatggctccacggttaagagcactga 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ttaatctttagatttgggcagagtgggctggagagatggctccgcggttaagagcactga 500
Query: 301 ctgctctt 308
||||||||
Sbjct: 501 ctgctctt 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_k07.g1 MSMg01no509_k07.g1 CHROMAT_FILE:
MSMg01no509_k07.g1 PHD_FILE: MSMg01no509_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:56 2005
(613 letters)
>mm_chr12_40362349_40363363
Length = 1015
Score = 1139 bits (589), Expect = 0.0
Identities = 608/615 (98%), Gaps = 2/615 (0%)
Strand = Plus / Plus
Query: 1 acagggtcagaacatccccagagtccatatctgagtcacaatccatctacactcagctac 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acagggtcagaacatccccagagtccatatccgagtcacaatccatctacactcagctac 260
Query: 61 ataaaatgtttcttagaaaaaaaaa--aagcacaaaaatgtctgtccagtagaatggaag 118
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaatgtttcttagaaaaaaaaaacaagcacaaaaatgtctgtccagtagaatggaag 320
Query: 119 tccctattgctggaaacactatgcacttcagaaatagaacttggaaacctatgagctgag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctattgctggaaacactatgcacttcagaaatagaacttggaaacctatgagctgag 380
Query: 179 actgataaacttccctaccctgaagactaactttcatgctatcagaagacaccatccaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgataaacttccctaccctgaagactaactttcatgctatcagaagacaccatccaag 440
Query: 239 ttcccatattatggaaggaaccaacactcctatccagctatgatgcctatgaatatatca 298
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccaaaggatggaaggaaccaacactcctatccagctatgatgcctatgaatatatca 500
Query: 299 acaaccagcatatggtcacaataaccctatgcgtgcagtagtggcacacataccttgaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaccagcatatggtcacaataaccctatgcgtgcagtagtggcacacataccttgaca 560
Query: 359 gtaaccaataactctctaattggacttaagacatgttcaacaaaagcaatacaataccta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaccaataactctctaattggacttaagacatgttcaacaaaagcaatacaataccta 620
Query: 419 gtactaatatagctaactactctgtgttagtgaaatcatggctattggaggagaatctat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtactaatatagctaactactctgtgttagtgaaatcatggctattggaggagaatctat 680
Query: 479 ggctgactactaatttagtaaaccaacaacagttgaaaagaactacagaaaaccataacc 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 ggctgactactaatttagtaaaccaacaacagatgaaaagaactacagaaaaccataacc 740
Query: 539 aatcaaaatgcagttgcgaagccctgtgctcatgaatagatctatctacaaaacagtcct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatcaaaatgcagttgcgaagccctgtgctcatgaatagatctatctacaaaacagtcct 800
Query: 599 gcacctcaagctcag 613
|||||||||||||||
Sbjct: 801 gcacctcaagctcag 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1015
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1005
Effective search space: 606015
Effective search space used: 606015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
