Query= MSMg01no509_n16.b1 MSMg01no509_n16.b1 CHROMAT_FILE:
MSMg01no509_n16.b1 PHD_FILE: MSMg01no509_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:14 2005
(686 letters)
>mm_chr6_21193498_21194580
Length = 1083
Score = 1241 bits (642), Expect = 0.0
Identities = 674/686 (98%), Gaps = 3/686 (0%)
Strand = Plus / Minus
Query: 1 aaaatcattatttctgtgtcaagataattctcctttataaatagaataccacacattttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 883 aaaatcattatttctgtgtcaagataattctcctttataaatagaataccacactttttt 824
Query: 61 aaaaaaccaaaacctatataaaaatcaaacagtaaattcaatgttcacatattacaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aaaaaaccaaaacctatataaaaatcaaacagtaaattcaatgttcacatattacaataa 764
Query: 121 atcaagttataggcaggtcttggactccaagagtttataatatgggaaaaagcacaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 atcaagttataggcaggtcttggactccaagagtttataatatgggaaaaagcacaacaa 704
Query: 181 aaataagaaacatgttgcaaatttattttatatgtttatatatgaacacatctgttcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aaataagaaacatgttgcaaatttattttatatgtttatatatgaacacatctgttcatg 644
Query: 241 ttttatatttgtatgaaaaatacacagaaacaaacaaaccatttacctgatgaccatatt 300
||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttttagaaaagtaggaaaaatacacagaaacaaacaaaccatttacctgatgaccatatt 584
Query: 301 ttcctataaataaaaaccatattaaagctttttataattcctttatcagagaaatgactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttcctataaataaaaaccatattaaagctttttataattcctttatcagagaaatgactt 524
Query: 361 ttaatctagttctaattaatgtttggaaaataaattctcaaacaattgtataatgcttac 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 523 ttaatctagttctaattaatgtttggaaaataaattctcaaaccattgtataatgcttac 464
Query: 421 taaatcttgcacattcctttgaattttaagtttcatgaaaaagtctattgatagtttata 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tatatcttgcacattcctttgaattttaagtttcatgaaaaagtctattgatagtttata 404
Query: 481 atcttataatattatgttacatatcacttattataatcagattagataggatgattttat 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 403 atcttataatattatgttacatatcacttat---aatcagattagataggatgattttat 347
Query: 541 aaataagagctaatgtaataaacatattttattcaaggaggaaaattatagttaataaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaataagagctaatgtaataaacatattttattcaaggaggaaaattatagttaataaat 287
Query: 601 attgactatttaccagaagctgataccatttagacaaatgtttccattactgctgacata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 attgactatttaccagaagctgataccatttagacaaatgtttccattactgctgacata 227
Query: 661 atggaaaagcagcctacagtcaaacc 686
| ||||||||||||||||||||||||
Sbjct: 226 acggaaaagcagcctacagtcaaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1083
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1073
Effective search space: 725348
Effective search space used: 725348
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_n16.g1 MSMg01no509_n16.g1 CHROMAT_FILE:
MSMg01no509_n16.g1 PHD_FILE: MSMg01no509_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:14 2005
(438 letters)
>mm_chr6_21060605_21061442
Length = 838
Score = 801 bits (414), Expect = 0.0
Identities = 432/438 (98%)
Strand = Plus / Plus
Query: 1 gtaggcacagacccagaagcacagtcttaggctcattcttccaaatatttgaaagcttct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gtaggcacagacccagaagcacagtcttaggctcattcttccaaatatttgaaagctttt 260
Query: 61 aagttcagaacccagtgtgttacaaaaaaaaagtcatattaattaaaaaatagatcaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 261 aagttcagaacccagtgtgttacaaaaaaaaagtcatattaattaaaacatagaccaatt 320
Query: 121 tcaagattttgatgatttataccaaggattatgtgcctaatatatggagacaggttttta 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tcaagattttgatgatttataccaaggattatctgcctaatatatggagacaggttttta 380
Query: 181 aaactatagactatgagactgagaaaatcagtttggtacattcactagagatttggaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactatagactatgagactgagaaaatcagtttggtacattcactagagatttggaatt 440
Query: 241 taaaaatctgtatagcctaaaatttggttaattataggtcactagtacatgaactcaaat 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagatatgtatagcctaaaatttggttaattataggtcactagtacatgaactcaaat 500
Query: 301 cagttgtctgtaccagagctttggagttctatgaatttcttggtatgctgggtatacttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttgtctgtaccagagctttggagttctatgaatttcttggtatgctgggtatacttt 560
Query: 361 caaaacatgtccaggctaatatgttttctctgacatgtccttattataaaattcttttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaacatgtccaggctaatatgttttctctgacatgtccttattataaaattcttttaa 620
Query: 421 catgtctttccctagagt 438
||||||||||||||||||
Sbjct: 621 catgtctttccctagagt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
