BAC Information

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BAC

Clone NameMSMg01-509P23
Chromosome6 (Build37)
Map Location 98,435,163 - 98,435,529
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P23.T7 (MSMg01no509_p23.b1)MSMg01-509P23.TJ (MSMg01no509_p23.g1)
ACCAG583540AG583541
length786800
length of high quality
(start - end)
373 (46 - 418)539 (78 - 616)
definitionCHROMAT_FILE: MSMg01no509_p23.b1 PHD_FILE: MSMg01no509_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:27 2005CHROMAT_FILE: MSMg01no509_p23.g1 PHD_FILE: MSMg01no509_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCG
GAATTCTTTATCTTTTTAAGGTGCCTTACTTCATAGCAAAATAAAACTTT
GAAAGGCACAGCTGCCTCTCTCCCCGCTACTGTATGCTTCCAAGGCAGCT
TTGCTTTGGTGTTGAGGGTTGCTCTAGGCTGGCGTTCTACTAGAGATAAA
GAGAAATAGCACACAAATCTCCTTCATTTTCCTCAATGAAAGATATTTCC
TACTTTTACTTCTCTATCTCCACCTTGACTTGTCTTTTCTTTTCTACTCA
GCCACACTTCCTTTGAGCCAAGTCCACTAAAGCGCCCCCTCACCTCCCCA
GCATCCATTCCCTGAAGCATCCCAGAGCAGTGGGGGTAACATGAGTTATG
CTGCAAAGCCTTCCACTGCACCCGCACTCCACCCATCTATTTGAATAAAT
GAGTTCATAAGGAAAAATTCAGTGTTAATTTCAATTCGGAAGCAATTATG
CAAGATTTAACCAATGCCTTTTAAATTAAAGATTTCCGTACTTATTCTGG
CTAAAATAAAACTACGATTTTCATTTTTCAAAACTAAATACAGCCCGTGA
GAGGACGGCGGTAATATTTGCAAGTGGTTATATTAGAAGCATATTTCTAC
TTTTGGAAATCAATATAATGTTTAGACACCCTAAATTTCCACTGGCATTC
AAATAAGCTGCCCTGAATTACTAATATTATGGTAAATGGATCTTTCTGGC
GAAAGCATGTGCCCATAAAATCCTAAATCCGGCGTA
NAACGATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACACTCCACTATCAGCAATGGA
CAGATCATGGAAACAGAAATTAAACAGAGACTCAGTAAAACTAACAAGTT
ATAAACCAAATGGATCTAACATATTTAGAGAACATTTCATCCTAAAGCGA
AATAATATACACGTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTG
ACTGTATAACTGGTCACAAAAAAGACCTCAACAGATACAAGAAGATTGAA
ATAATCCCATGCATCCTATCAGATCACCATGGACTAAGGCTGGTCTTAAA
TTCCAACAAAAACAACAGAAAATGCACATACACATGGAAGCTGAACAACC
CTCTACTCAATGATAACTTGCCTAAGGAAGAAATAAAAAAAGAAATTAAC
GACTTTTTAGAATTTAATGAAAGTGAAGACACATCGTACCAAAACTTATG
GACACAATGAAAGCAGTGGTAAGAGGAAAACTCATAGTTCTAAGTGCCTC
CAAAAGGAAACTAGAGAGAGCTTACACTAGCAGCTTGACAGCACACCTGA
AAGCTCTAGAACAAAAAGAAGCAAATACACCCAAGAGAAGTAGATGGCAG
GAAATAATCAAACTCAGGGCTAAAACCCNCCCCAATAGAACAAAAAGAAC
TATTATAAGATCTACAAAACCTAGAGCTGGGTCTTGGAGACATCAACAAG
ACTGATAAACCCTGGGCACACTAACAAGAGGCCAGAGATGGTATCTTATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p23.b1 MSMg01no509_p23.b1 CHROMAT_FILE:
MSMg01no509_p23.b1 PHD_FILE: MSMg01no509_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:27 2005
         (373 letters)



>mm_chr6_98434958_98435729
          Length = 772

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttatctttttaaggtgccttacttcatagcaaaataaaactttgaaaggcaca 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttatctttgtaaggtgccttacttcatagcaaaataaaactttgaaaggcaca 265

                                                                       
Query: 66  gctgcctctctccccgctactgtatgcttccaaggcagctttgctttggtgttgagggtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctgcctctctccccgctactgtatgcttccaaggcagctttgctttggtgttgagggtt 325

                                                                       
Query: 126 gctctaggctggcgttctactagagataaagagaaatagcacacaaatctccttcatttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 gctctaggctggcgttctactagagataaagagaaatagcacacaaatcgccttcatttt 385

                                                                       
Query: 186 cctcaatgaaagatatttcctacttttacttctctatctccaccttgacttgtcttttct 245
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 cctcaatgaaagatatttcctacttttacttctctatctctaccttgacttgtcttttct 445

                                                                       
Query: 246 tttctactcagccacacttcctttgagccaagtccactaaagcgccccctcacctcccca 305
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 446 tttctactcagccacacttcctttgagccaagtccac-aaagcgccccctcacctcccca 504

                                                                       
Query: 306 gcatccattccctgaagcatcccagagcagtgggggtaacatgagttatgctgcaaagcc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatccattccctgaagcatcccagagcagtgggggtaacatgagttatgctgcaaagcc 564

                   
Query: 366 ttccactg 373
           ||||||||
Sbjct: 565 ttccactg 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 772
Length adjustment: 9
Effective length of query: 364
Effective length of database: 763
Effective search space:   277732
Effective search space used:   277732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)