Query= MSMg01no510_g18.b1 MSMg01no510_g18.b1 CHROMAT_FILE:
MSMg01no510_g18.b1 PHD_FILE: MSMg01no510_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:00 2005
(711 letters)
>mm_chr6_110358628_110359737
Length = 1110
Score = 1295 bits (670), Expect = 0.0
Identities = 697/706 (98%), Gaps = 1/706 (0%)
Strand = Plus / Minus
Query: 6 gaattctttcatcttcacactgaaggtaatcagagaaatgtaacatgcaaaagactttag 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaattctttcatcttcaaactgaaggtaatcagagaaatgtaacatgcaaaagactttag 851
Query: 66 aacaatggctgtaaaataaagatgttgaatagctattacttgaaagagttcaagaggtga 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 aacaatggctgtaagataaagatgttgaatagctattacttgaaagagttcaagaggtga 791
Query: 126 ttgacacaagcctgtatctttattatttaatctgtcaaatatcttaatgttctatttcct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttgacacaagcctgtatctttattatttaatctgtcaaatatcttaatgttctatttcct 731
Query: 186 atgaaattgtgggattcgtcttaatgaagtttaaatgatgaattgtgtaagcaccagtag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atgaaattgtgggattcgtcttaatgaagtttaaatgatgaattgtgtaagcaccagtag 671
Query: 246 taatgcctccaagtgcatgtacttctctatctacactggggatcaggaaatatttgttta 305
||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 670 taatgcctccaagtggatttacttctctatctacattggggatca-gaaatatttgttta 612
Query: 306 aattaccaggcaaaacttaggattctgaagcttaaaaggaaccgtcttcaggttgtttag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aattaccaggcaaaacttaggattctgaagcttaaaaggaaccgtcttcaggttgtttag 552
Query: 366 tacaaagatcccattatttgaacattatgtagaacacatacagacaaattccccctcgtt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tacaaagatcccattatttgaacattatgtagaacacatacagacaaattccccctcgtt 492
Query: 426 gatctggcattttgcaaatatattggcaaatgtcaacagtttgcatatttgaaacatatt 485
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 491 gatctggcattttgcaaatatattagcaaatgtcaacagtttgcatatttgaaacatatt 432
Query: 486 cctttagttggaatttcaaatgggttgattatgacattagactccccatataattcaaag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cctttagttggaatttcaaatgggttgattatgacattagactccccatataattcaaag 372
Query: 546 agttgtcataaagtctttaagtatgatttaccatttaaaaagcaccttaatctgaaatac 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agttgtcataaagtctttaagtatgatttaccatttaaaaagcaccttaatctgaaatac 312
Query: 606 tacagatttttaaacattattgggaaaccaatttaagaatatgccagaaatttcttttat 665
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 311 tacagatttttaaacattattgggaaaccaatttaagaatacgccagaaatttcttttat 252
Query: 666 atcctgaataatgaattgatttttttacttttggcaatttatatgg 711
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 251 atcctgaataatgaattgattttcttacttttggcaatttatatgg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1110
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1100
Effective search space: 771100
Effective search space used: 771100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no510_g18.g1 MSMg01no510_g18.g1 CHROMAT_FILE:
MSMg01no510_g18.g1 PHD_FILE: MSMg01no510_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:00 2005
(677 letters)
>mm_chr6_110275422_110276496
Length = 1075
Score = 1176 bits (608), Expect = 0.0
Identities = 659/680 (96%), Gaps = 8/680 (1%)
Strand = Plus / Plus
Query: 1 ctcattcctaagtcatgaaactagcagacatagtgtggtgaagttttcaatctcttctgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctcattcctaagtcatgaaactagcagacatagtgtggtgaagttttcaacctcttctgg 260
Query: 61 cctcttctttctccttctatctctttctctaccatctctctcaggatcatttccaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcttctttctccttctatctctttctctaccatctctctcaggatcatttccaaagat 320
Query: 121 gtttgtcccaggtggtatttttcctattagccatgtaatgaatatcatattaagcatcaa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gtttgtcccaggtggtatttttcctattagccatgtaatgaatattatattaagcatcaa 380
Query: 181 ggaaaataacattaattaaaatgggaaatacatgatcaagaacattaaaaatacttccat 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 381 ggaaaataacattaattaaaatgggaaatacattatcaagaacattaaaaatatttccat 440
Query: 241 tcattttttttgctagttattgaattattacaggacagtaagctttaccatcttttgctg 300
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatttggtttgctacttattgaattattacaggacagtaagctttaccatcttttgctg 500
Query: 301 cagatctctgaaagtgttgagtcagaagcagtgtttctttatgatcctaaaatcttcact 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 cagatctctgaaagtgttgagtcagaagcagtgtttctttatgatcctaaaatcttcaat 560
Query: 361 gggcattgtaggaaatgggctcaggtaaatcaaatcagtgttttacatttaaaaatggaa 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacattgtaggaaatgggctcaggtaaatcaaatcagtgttttacatttaaaaatggaa 620
Query: 421 acttacttcaaagaaaagtgatacttttttcatttattaacatttggcatatatttagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttacttcaaagaaaagtgatacttttttcatttattaacatttggcatatatttagaa 680
Query: 481 gtttttaagagtcaaaaatgtgatatatgtggcattgatcagaaagagaagttaagttca 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 gtttttaagagtcaaaaatgtgatatatatggcattgatcagaaagagaagttaagttca 740
Query: 541 caggccaaaaggaaatgggagctgaatcagaaatcaaataccaatggttcctattatatg 600
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taggccaaaaggaaatgggtgctgaatcagaaatcaaataccaatggttcctattatatg 800
Query: 601 agtccattgaagttatttttttttttaaa---ttctaaaagctattttttccagatgtca 657
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 801 tgtccattgaagttatttttt-----aaaaaattctaaaagctattttttccagatgtca 855
Query: 658 ctaagatttgactgcaactg 677
||||||||||||||||||||
Sbjct: 856 ctaagatttgactgcaactg 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1075
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1065
Effective search space: 710355
Effective search space used: 710355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
