BAC Information

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BAC

Clone NameMSMg01-510K11
Chromosome6 (Build37)
Map Location 77,480,253 - 77,480,521
singlet/doubletsinglet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510K11.T7 (MSMg01no510_k11.b1)MSMg01-510K11.TJ (MSMg01no510_k11.g1)
ACCAG584040AG584041
length728733
length of high quality
(start - end)
269 (375 - 643)134 (179 - 312)
definitionCHROMAT_FILE: MSMg01no510_k11.b1 PHD_FILE: MSMg01no510_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:17 2005CHROMAT_FILE: MSMg01no510_k11.g1 PHD_FILE: MSMg01no510_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGACCATAATTGCGGCGTGAAANGAANCACANATTGCGAATCCGCCGNG
AANCANCAGATTTTTCGNAACCGGGGCGGNGNCANANCNCCCNNNCNNAN
NNNAAGNNNCGGNAACAAGAACCCAGAANAAAGGCCCNACCCACNCAAAG
CAGAAGCAGGGAAAANNANGCGCAGCGNNGGNGGNAGNCANAANAACAGC
AACGGAAANCNGGGGNNNGGCNGGCCNCNANNCNAAACAGGNNGCNATTT
TTATCTTCCTTTTACACAGGTAGAAGCTGAGCCACAAAGCGACTGATATG
TCCAATAGGATCTGGTTTTTTTTTTGGAAAACAANANGANCNNCANANNN
NANNNGNNTATTTGTTTGACAGCAAGAGTATATGTTGGCATGTCCATGCC
ATAGTCCATGTGAAATTCACAGGAAATCTTTGGGCTCTCTCCCTTTTCTG
CCTTGATGTCATTCCTCTGAGGCTGGGGCTGTTCTCTGAGCCCTTGCTGG
ATTGTAAGATACAATTTTTCACTGTGTCCTATTAGCTAATTTTTAATCTG
GAAGCGAGAAAGGAATAGGTCCTTTCTATGAGAACATACCAGCTTATCCT
CTCTGTGTGGACTGAGGTCTTTCCACAACTAGGAAAATTTAGTTGTATGG
TTTTGTCAATCATGTATTTACACATTAACCACTAATATAGTGCTTACTGG
GCTGTAAATAGAAAGAAAATACAAAGGC
GGGGCGAATGGGAGGGAAGGTCGGGGGGAGGGGGGGCTTTCGCAGCGTGA
GGAGAGNANAGAAGGTTTCCAGCACAGGGGCANAGANNNNAGAGGGACCA
GGGGCGGGCGGACGGGGATATTCCCCAAGGACAGGAAGGGACAGAGAGAG
AAACTCACATACATACTTACACACATACATAAGACAAATATACACATCTG
TATCTCTTGCCTAGGTATGTATATGTGTGTGTGTGTATAATATATATATA
TATTTATACTAAATATATTCATATACCACATTGTTTAGGATTTTTGATAG
TTGCATTAATGGCGTTTTGTTTTTTTTATTAGACACAGAAGCAAAGCGGT
CTTCCTAAAAGACTTCTATCCATGCTTATCTTAGAAGCTCCAGGGCACTT
TCTTAATATAGGATTTCGTGGATGGCTCCACATTGTTCGCAAAATTTGCA
GCTGAGAATCACCATATATACCATCTGTGACACTGACACATAGTTTGTAG
CCCTAGTAGAGATGTTAAACAGTGCATCTCAAAGGATACATAAACATTCC
AAAAATTTGGAGCTTGATTTTGACCGACAAAGATAATAATTAGTATTTAA
ATATTTGTCTTTTTGTTTTCTCTCCAGGGCTGGAAGAAATAAAAAAATGG
CTCTGCTTTCTCATTTCATTAAAGCAGAAATGGAACTTACTTTTATTAAC
ATTTAATATAGCTTTGAGATTTATAGATAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_k11.b1 MSMg01no510_k11.b1 CHROMAT_FILE:
MSMg01no510_k11.b1 PHD_FILE: MSMg01no510_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:17 2005
         (269 letters)



>mm_chr6_77480053_77480721
          Length = 669

 Score =  497 bits (257), Expect = e-145
 Identities = 266/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtatatgttggcatgtccatgccatagtccatgtgaaattcacaggaaatctttggg 60
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 201 agagtatatgttggcatgtccatgccatagcccatgtgaaattcagaggaaatctttggg 260

                                                                       
Query: 61  ctctctcccttttctgccttgatgtcattcctctgaggctggggctgttctctgagccct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctccctcttctgccttgatgtcattcctctgaggctggggctgttctctgagccct 320

                                                                       
Query: 121 tgctggattgtaagatacaatttttcactgtgtcctattagctaatttttaatctggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctggattgtaagatacaatttttcactgtgtcctattagctaatttttaatctggaag 380

                                                                       
Query: 181 cgagaaaggaataggtcctttctatgagaacataccagcttatcctctctgtgtggactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagaaaggaataggtcctttctatgagaacataccagcttatcctctctgtgtggactg 440

                                        
Query: 241 aggtctttccacaactaggaaaatttagt 269
           |||||||||||||||||||||||||||||
Sbjct: 441 aggtctttccacaactaggaaaatttagt 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)