BAC Information

Click to search

BAC

Clone NameMSMg01-511B06
Chromosome6 (Build37)
Map Location 72,062,514 - 72,188,378
singlet/doubletdoublet
Overlap geneSt3gal5, Atoh8
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057
Downstream geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511B06.T7 (MSMg01no511_b06.b1)MSMg01-511B06.TJ (MSMg01no511_b06.g1)
ACCAG584360AG584361
length731733
length of high quality
(start - end)		492 (70 - 561)456 (74 - 529)
definitionCHROMAT_FILE: MSMg01no511_b06.b1 PHD_FILE: MSMg01no511_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:50 2005CHROMAT_FILE: MSMg01no511_b06.g1 PHD_FILE: MSMg01no511_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,062,514 - 72,063,004)(72,187,923 - 72,188,378)
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTGTTTGCATTCTTGAGGGTTTTTTATTTTTTTAAGAATCACAC
ATGTGGGATTTGTCTTTCTGTATTCAATTTATTTCACCCAGCATGGTGTC
TTCCATGGGGCTCCATTTTGAAGCAAGCTAGAAGCATCTTTGCCCATCAT
TGCTTCAGGCTGCCTCTCCCTTTGGGGTGAGGCTAATAGAGACTGATTTA
GAACTTACTGGCACCCATTGCAGCGCATCCCCCGCTCGCCAACCCCAGTG
CTGCTGCTTGCCTTGCCTGCCCACTGACAGCTGCAGACTGCCCTGCTCAG
TGCAGACACCCCGCTGCAGCCCTGCACAGCTCCCTCTCTCTGAGATCATG
TTACCTTCTTGGACGGTTGATATCCAAAGCAGGGACTCAGCCGTTGTTGT
CTCCATGTCTTTACTGTGAACATTGGCAGGACCAGTGAAACTTAACTGAC
AAATTACCCTTTCCTGGTGATGCATCGGGGCTTCTAAGGTGGTCCCTGCT
CCTGAGTTAAGTAATTTAAAAATTTTTCCAGAACTATTCAACTTATATGA
TGAGAGTTCCAGAAATATCTAAACCCTACAAAGCTACCAATTTTATCCAT
TTCTTCCCCCCCCCCCTTTTTTTTGACAGATTTTTCAGATTGTACCCCAA
GCAAGTAATTCTCCTGCCTTTTCCCCCTGGG

TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTGCACCTGCCTAATTCTTACTCT
TCCCCAGTTTCTCTAATGGGGCACAGGCACTTTGGGACAATCTGAACGGC
CAGAAATAGACTCCATGTTTCAGAATGTAGAGCTTCATGCAGCAAGTATT
TAAGGCCCCTCCTCATCTGGCCAAGAAGACAGAACTCACAGCTCCATCCT
GAAGAGCTGACCTAGTCCTGACCAGTCCTCACGGGTTGTCCTTGCGGACC
CAGGACCCATGGGGCAGGCTCTGCTCGGCAGCAGAGAGAAAACAGTAGTG
CACAGCCACCATGATTCAGGCCCTTTCGGCCTGAGACTCCTGGCTGCCCA
AGGAGTCCTGTCATTTGATTCTGATCTGGAAGGAACCCGGCAGACACCAG
GCTGGGCTGAGGGAGACCTGTGGCTTTAGCGTCTCAGGTTAGAAGAGCAG
AGACAGCCAGCAGTCAAAACAAACAGACAAACCAATGAACCAACCCAGTC
CCACTGACGGTCCAGTCCCTCATCTTCGTGTGCTAACGAGCTGCTGGGCT
CTCAAGAGTTAGAGGGAGCAGGATAGTTCAGACTCAGGCTTCAGACTCGG
TAAGGATTCTAACAGCTTTTCTCTCACTCCCTTCTGCTGGCTATTTTTCT
TCACCATAAGTTTTGGTTCTCTTGTAGGCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_b06.b1 MSMg01no511_b06.b1 CHROMAT_FILE:
MSMg01no511_b06.b1 PHD_FILE: MSMg01no511_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:50 2005
         (492 letters)



>mm_chr6_72062313_72063204
          Length = 892

 Score =  905 bits (468), Expect = 0.0
 Identities = 486/492 (98%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagggttttttatttttttaagaatcacacatgtgggatttgtctttctgtattcaatt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgagggtttttta-ttttttaagaatcacacatgtgggatttgtctttctgtattcaatt 260

                                                                       
Query: 61  tatttcacccagcatggtgtcttccatggggctccattttgaagcaagctagaagcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tatttcacccagcatggtgtcttccatggggctccattttgaagcaagcaagaagcatct 320

                                                                       
Query: 121 ttgcccatcattgcttcaggctgcctctccctttggggtgaggctaatagagactgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttgcccatcattgcttcaggctgcctctccctttggggtgaggctaagagagactgattt 380

                                                                       
Query: 181 agaacttactggcacccattgcagcgcatcccccgctcgccaaccccagtgctgctgctt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 agaacttactggcacccattgcagcgcagcccccgctcgccaaccccagtgctgctgctt 440

                                                                       
Query: 241 gccttgcctgcccactgacagctgcagactgccctgctcagtgcagacaccccgctgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccttgcctgcccactgacagctgcagactgccctgctcagtgcagacaccccgctgcag 500

                                                                       
Query: 301 ccctgcacagctccctctctctgagatcatgttaccttcttggacggttgatatccaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgcacagctccctctctctgagatcatgttaccttcttggacggttgatatccaaag 560

                                                                       
Query: 361 cagggactcagccgttgttgtctccatgtctttactgtgaacattggcaggaccagtgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagggactcagccgttgttgtctccatgtctttactgtgaacattggcaggaccagtgaa 620

                                                                       
Query: 421 acttaactgacaaattaccctttcctggtgatgcatcggggcttctaaggtggtccctgc 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 621 acttaactgacaaattaccctttcctggggatgcatcggggcttctaaggtggcccctgc 680

                       
Query: 481 tcctgagttaag 492
           ||||||||||||
Sbjct: 681 tcctgagttaag 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no511_b06.g1 MSMg01no511_b06.g1 CHROMAT_FILE:
MSMg01no511_b06.g1 PHD_FILE: MSMg01no511_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:50 2005
         (456 letters)



>mm_chr6_72187723_72188578
          Length = 856

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgcacctgcctaattcttactcttccccagtttctctaatggggcacaggcacttt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 656 tgtttgcacctgcctaattcttactcttccccagtttctgtaatggggcacaggcacttt 597

                                                                       
Query: 61  gggacaatctgaacggccagaaatagactccatgtttcagaatgtagagcttcatgcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gggacaatctgaacggccagaaatagactccatgtttcagaatgtagagcttcatgcagc 537

                                                                       
Query: 121 aagtatttaaggcccctcctcatctggccaagaagacagaactcacagctccatcctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aagtatttaaggcccctcctcatctggccaagaagacagaactcacagctccatcctgaa 477

                                                                       
Query: 181 gagctgacctagtcctgaccagtcctcacgggttgtccttgcggacccaggacccatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gagctgacctagtcctgaccagtcctcacgggttgtccttgcggacccaggacccatggg 417

                                                                       
Query: 241 gcaggctctgctcggcagcagagagaaaacagtagtgcacagccaccatgattcaggccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gcaggctctgctcggcagcagagagaaaacagtagtgcacagccaccatgattcaggccc 357

                                                                       
Query: 301 tttcggcctgagactcctggctgcccaaggagtcctgtcatttgattctgatctggaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tttcggcctgagactcctggctgcccaaggagtcctgtcatttgattctgatctggaagg 297

                                                                       
Query: 361 aacccggcagacaccaggctgggctgagggagacctgtggctttagcgtctcaggttaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aacccggcagacaccaggctgggctgagggagacctgtggctttagcgtctcaggttaga 237

                                               
Query: 421 agagcagagacagccagcagtcaaaacaaacagaca 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 agagcagagacagccagcagtcaaaacaaacagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |