Query= MSMg01no511_j16.b1 MSMg01no511_j16.b1 CHROMAT_FILE:
MSMg01no511_j16.b1 PHD_FILE: MSMg01no511_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:31 2005
(527 letters)
>mm_chr6_49741724_49742650
Length = 927
Score = 743 bits (384), Expect = 0.0
Identities = 461/500 (92%), Gaps = 27/500 (5%)
Strand = Plus / Minus
Query: 54 gaaccctgactgcagcgatgagagcgctgaatcctaa----tcactagatggtagctgca 109
|||||| |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 923 gaaccccgactgcagcgatgagagcgctgaatcctaaccactaactagatggtagctgca 864
Query: 110 aggttattaagaagagttttggg-----ttgttttgttttgttgttg-tttgt----ttg 159
||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||
Sbjct: 863 aggttattaagaagagttttgggtttttttgttttgttttgtt-ttgttttgttttgttg 805
Query: 160 tttgtttg-tttgtttctctgtgcagtcctggctgtcctaaaactcactctgtataaggc 218
|||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 804 tttgtttgttttttttctctgtgcagtcctggctgtcctgaaactcactctgtagaaggc 745
Query: 219 ttgcc-----------tgttcaaggccggcgtggaaatagtattgtcaaagcgttaaaca 267
||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 744 ttgcctgtcaagtgaatgttcaaggcatgtgtggaaatagtattgtcaaagcgttaaaca 685
Query: 268 aatctttaagggatttctaatgagaccaggaaagtgaagagactctggtgattctcactt 327
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 aatctttaagggatttctaatgagaccaggaaagtgaagagtctctggtgattctcactt 625
Query: 328 ggggacaatcttgactccaggaaacatctgaaaacttttttcattgattgtcaccacttg 387
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 624 ggggacaatcttgactccaggaaacatctgaaaactttttttattgattgtcaccgcttg 565
Query: 388 gtgacatatatatgtgttctagcatatagtgattaaaagcagagttgttgctaaatgcct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgacatatatatgtgttctagcatatagtgattaaaagcagagttgttgctaaatgcct 505
Query: 448 gccagtgcacaccacaaccctctccatgtgagcacttaacatggccaagatggccatggt 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 gccagtgcacaccacaaccctctccatgtgagcacttaacatggccaagatggccacggt 445
Query: 508 gccaccttgattgaatgtgt 527
||||||||||||||||||||
Sbjct: 444 gccaccttgattgaatgtgt 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j16.g1 MSMg01no511_j16.g1 CHROMAT_FILE:
MSMg01no511_j16.g1 PHD_FILE: MSMg01no511_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:31 2005
(570 letters)
>mm_chr6_49578489_49579458
Length = 970
Score = 1027 bits (531), Expect = 0.0
Identities = 563/579 (97%), Gaps = 9/579 (1%)
Strand = Plus / Plus
Query: 1 ctctgcctcccaagtgcagaatgaatcctcatctcctcccccgtacaccttcaaaacact 60
||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||
Sbjct: 192 ctctgcctcccaagtgcaggatgaatcctcatcccctcccccgtgcaccttcaaaacact 251
Query: 61 catgacactgctctgtaactgctacttagtggtccgtattcagagatccctccctctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 catgacactgctctgtaactgctacttagtggtccgtattcagagatccctccctctcca 311
Query: 121 ctattctccacctctgtggaccctctaacactctgggcacacgtgggtgggattggtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctattctccacctctgtggaccctctaacactctgggcacacgtgggtgggattggtctg 371
Query: 181 tgctcagtgatccatcggttggatcctctcaggtccagtttccaagcttctgttttcccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgctcagtgatccatcggttggatcctctcaggtccagtttccaagcttctgttttcccg 431
Query: 241 ccatgaaaacagagaggctgaaggccggtgcctccaactccagaggatcatactttgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccatgaaaacagagaggctgaaggccggtgcctccaactccagaggatcatactttgcta 491
Query: 301 tgacaggcttgatttcctttatttgaatcaacagttgaatacacagtgttcaaaagtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgacaggcttgatttcctttatttgaatcaacagttgaatacacagtgttcaaaagtagt 551
Query: 361 tttgtagaagtcagggttctgtagaagtcagtctttgttttgatttctgaagaataatt- 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttgtagaagtcagggctctgtagaagtcagtctttgttttgatttctgaagaataattt 611
Query: 420 --------cttttattgtgacaagaaaaggtgacttaaatgttctgtattctggcattta 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atagtgttcttttattgtgacaagaaaaggtgacttaaatgttctgtattctggcattta 671
Query: 472 aggaggtaacccttagaactcagtatttgaggtatatgcttttaaagaatatttaattta 531
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aggaggtaacccttagaacccagtatttgaggtatatgcttttaaagaatatttaattta 731
Query: 532 ctcttgaagaaattgctagtactctataggtttcaagtt 570
||||||||||||||||||| ||||||||||||| |||||
Sbjct: 732 ctcttgaagaaattgctagcactctataggttttaagtt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
