BAC Information

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BAC

Clone NameMSMg01-512A15
Chromosome6 (Build37)
Map Location 51,609,958 - 51,610,508
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
Downstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512A15.T7 (MSMg01no512_a15.b1)MSMg01-512A15.TJ (MSMg01no512_a15.g1)
ACCAG585092AG585093
length523759
length of high quality
(start - end)		40 (75 - 114)551 (65 - 615)
definitionCHROMAT_FILE: MSMg01no512_a15.b1 PHD_FILE: MSMg01no512_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:04 2005CHROMAT_FILE: MSMg01no512_a15.g1 PHD_FILE: MSMg01no512_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGGGCGCTATACGATCCTTTCGAAGGATCCGAATCAGCATCCTTG
AACAAACACGAGGAACTGCTAGTGGATTGTTCCCAGGCTTACATCCAGCT
ACCCGTTCTATAGTCCACCTGATCAGGGAGGAATGCCCCACCCGTGGAAA
CTCTCCCTTTATTAACAATAAGGAAAATACCCCTCAAAATTCCCCCGGGC
CCACCCTAAGGAAGGGAAGCCTTCTATTGAAAAGGCCTTTTTCCCCCAAG
AAAAAATTAATTTTTGTGTCAAAGTTTAAAAAAAAACACCCCTTAAGCCA
AAAACCGGGGGGGATATGGTGGAAAAAAAAATGGGTTCTTTTAAAAGGTG
GAAACCCCCCCAAAAAAGGGGGGATCTAAAAAACCCCCCCCCCCCCCCCC
TGGGGGGTTTTTTAAAAAAAAGGGGGGGGTAATTCCCTCCCCCAAAAGTT
TTTTTCCCCCCCCAGGGGGGGCCCCCCCCCCCCCCCCCTCCCGGGGAAAA
CCCCCCCCCACAAAATTTTTTTT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTATTTCAAGTTCCCTGCAGAGAGACTCCAGCCCA
TCCAGTTTCCTCTCTACTCTTTCCCCAACCTTAGCTTAGGTCCTGGCCGT
GGGTCCCCAGGAAGCTTGGGGTATTTCCTCTTAACTTTTCTTCCTGGCTA
TCTTGGTGCCAAGCTGAGGTTGACAGGTCTTTGACCTGTCTGGAGAGGAA
GGACTCCGCCACGAAGGGACCAGAGAGCAGAAGGTGCCCTGACCCTGGTG
ACCTCTTGAACAAATGGTGACTTCCAGGCAGGTGGAGAGTAGAAGGAAGC
AGGGAGAGAGAGGTTGGGAAGTAGCGGCATGGGTGCTGCAGAGACGGGAA
GAAAGAGGAGGCCATTCCCTGTGCTTGACTGTAGCCAGCAGGCAGTTCTC
TGTCACCACCCAGAGCTCTCTGTCATCCCCTTGGTGTTTCGGTGCATCGT
GTGGGTGCCTTCTCAAACTTGGGCCTCATTACACGCTCAGGACCTTTGCA
CCTGCTTTGCTCCCTCATTGAAATATTCGCCTCCTCCTGCTAAGTTCCTG
CTTATCCCTCAGTTTAAATTCCAAGGTTATGGCCTCAGAAAGCTCTCTCT
CTAAGTAGGCGAGGTCCCCGAGGGTGATGTTATTCCTTTCCTGCTTGTCC
CCTGGAGTGAACACCTATGGCATTTAGAGATGAATTTTGTCTTAATTGCA
CCATAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_a15.g1 MSMg01no512_a15.g1 CHROMAT_FILE:
MSMg01no512_a15.g1 PHD_FILE: MSMg01no512_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:04 2005
         (551 letters)



>mm_chr6_51609758_51610708
          Length = 951

 Score = 1019 bits (527), Expect = 0.0
 Identities = 545/551 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatttcaagttccctgcagagagactccagcccatccagtttcctctctactctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttatttcaagttccctgcagagagactccagcccatccagtttcctctctactctttcc 260

                                                                       
Query: 61  ccaaccttagcttaggtcctggccgtgggtccccaggaagcttggggtatttcctcttaa 120
           ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 261 ccaaccttagcttaggtcctggctgtgggtctccagtaagcttggggtatttcctcttaa 320

                                                                       
Query: 121 cttttcttcctggctatcttggtgccaagctgaggttgacaggtctttgacctgtctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttcttcctggctatcttggtgccaagctgaggttgacaggtctttgacctgtctgga 380

                                                                       
Query: 181 gaggaaggactccgccacgaagggaccagagagcagaaggtgccctgaccctggtgacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaaggactccgccacgaagggaccagagagcagaaggtgccctgaccctggtgacct 440

                                                                       
Query: 241 cttgaacaaatggtgacttccaggcaggtggagagtagaaggaagcagggagagagaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cttgaacaaatggtgacttccaggcaggtggagagtagaaggaagcagggagacagaggt 500

                                                                       
Query: 301 tgggaagtagcggcatgggtgctgcagagacgggaagaaagaggaggccattccctgtgc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaagtagcggcatgggggctgcagagacgggaagaaagaggaggccattccctgtgc 560

                                                                       
Query: 361 ttgactgtagccagcaggcagttctctgtcaccacccagagctctctgtcatccccttgg 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ttgactgtagccagcaggcagttctcggtcaccacccagagctctctgtcatccccttgg 620

                                                                       
Query: 421 tgtttcggtgcatcgtgtgggtgccttctcaaacttgggcctcattacacgctcaggacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtttcggtgcatcgtgtgggtgccttctcaaacttgggcctcattacacgctcaggacc 680

                                                                       
Query: 481 tttgcacctgctttgctccctcattgaaatattcgcctcctcctgctaagttcctgctta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgcacctgctttgctccctcattgaaatattcgcctcctcctgctaagttcctgctta 740

                      
Query: 541 tccctcagttt 551
           |||||||||||
Sbjct: 741 tccctcagttt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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